Plant FIBer expression Database

Potri.007G061701 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G07820 57 / 1e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015035
[exp]
56 / 7e-12 AT2G07820 76 / 1e-19 unknown protein
PFAM info
Representative CDS sequence
>Potri.007G061701.1 pacid=42766731 polypeptide=Potri.007G061701.1.p locus=Potri.007G061701 ID=Potri.007G061701.1.v4.1 annot-version=v4.1
ATGGATATCGCTGGAAGACTTGCAACAATTCAGCAAGAAATAGGTCAGGTGGAAAACGAGAAACTCCAACGAGAGCAAATGCTTGGTCTCTTCTGGGAAC
ACATGCCGGCGATCGATCCAAGTCTCATACGAGGATCGTATGCTGGCTATACAGAATCAAATCCAAGCCCTCGAAAACCGAAAGAGGGCCCTCCTTCTCG
AACAGCAGGAGCTTCTTGTTCAGGCTGCCACACGTGA
AA sequence
>Potri.007G061701.1 pacid=42766731 polypeptide=Potri.007G061701.1.p locus=Potri.007G061701 ID=Potri.007G061701.1.v4.1 annot-version=v4.1
MDIAGRLATIQQEIGQVENEKLQREQMLGLFWEHMPAIDPSLIRGSYAGYTESNPSPRKPKEGPPSRTAGASCSGCHT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G07820 unknown protein Potri.007G061701
[exp]
0 1
AT5G01650 Tautomerase/MIF superfamily pr... Potri.016G126700
[exp]
15.32 0.7316
AT1G48040 Protein phosphatase 2C family ... Potri.008G100700
[exp]
22.80 0.7567
AT5G13640 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL AC... Potri.001G171000
[exp]
23.15 0.7330 Pt-ATPDAT.2
AT1G53580 GLY3, GLX2-3, E... GLYOXALASE 2-3, ETHE1-LIKE, gl... Potri.005G204800
[exp]
35.83 0.7160
AT3G59280 TXR1 THAXTOMIN A RESISTANT 1, Prote... Potri.014G151200
[exp]
41.08 0.7282 TXR1.1
AT5G10730 NAD(P)-binding Rossmann-fold s... Potri.006G268000
[exp]
45.16 0.6962
AT3G26922 F-box/RNI-like superfamily pro... Potri.011G104200
[exp]
56.12 0.6692
AT5G13640 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL AC... Potri.003G063100
[exp]
56.57 0.6877 Pt-ATPDAT.1
AT5G08290 YLS8 YELLOW-LEAF-SPECIFIC GENE 8, m... Potri.007G072700
[exp]
68.58 0.6794
Potri.009G062700
[exp]
74.12 0.6469

Potri.007G061701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.