Plant FIBer expression Database

Potri.007G061841 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATMG01270 291 / 4e-103 ATMG01270.1, RPS7 mitochondrial ribosomal protein S7 (.1)
AT2G07696 291 / 4e-103 Ribosomal protein S7p/S5e family protein (.1)
ATCG00900 75 / 1e-17 ATCG00900.1, RPS7.1 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
ATCG01240 75 / 1e-17 ATCG01240.1, RPS7.2 ribosomal protein S7 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G140500
[exp]
77 / 7e-18 ATCG00900 249 / 2e-85 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
Potri.013G138900
[exp]
73 / 7e-17 ATCG00900 310 / 2e-110 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002394
[exp]
70 / 3e-15 ATCG00900 229 / 3e-77 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
Lus10027894
[exp]
62 / 5e-12 ATCG00900 167 / 7e-53 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00177 Ribosomal_S7 Ribosomal protein S7p/S5e
Representative CDS sequence
>Potri.007G061841.1 pacid=42766847 polypeptide=Potri.007G061841.1.p locus=Potri.007G061841 ID=Potri.007G061841.1.v4.1 annot-version=v4.1
ATGGGGAGCTTGGATGGTGAGCAAAAACAATTGATCAAGAAGTTGGTCAACTTTCGCATGAAAGAAGGTAAAAGAACGAGAGTTCGTGCTATTGTTTATC
AAACTTTTCATCGCCCAGCTCGAACTGAACGCGATGTAATAAAACTTATGGTTGACGCTATAGAGAATATAAAGCCCATATGCGAAGTAGAAAAAGTAGG
AGTAGCAGGTACTATTTATGATGTCCCTGGGATTGTAGCCAGGGATCGTCAACAAACCTTAGCTATTCGTTGGATCCTTGAAGCAGCTTTCAAACGACGT
ATAAGCTACAGGATAAGCTTAGAGAAATGTTCATTTGCTGAGATACTAGATGCTTACCGAAAGAGGGGAATTGCACGTAAGAAAAGGGAGAATCTTCATG
GACTGGCTTCCACCAATCGAAGTTTCGCGCATTTCAGATGGTGGTAA
AA sequence
>Potri.007G061841.1 pacid=42766847 polypeptide=Potri.007G061841.1.p locus=Potri.007G061841 ID=Potri.007G061841.1.v4.1 annot-version=v4.1
MGSLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAIENIKPICEVEKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRR
ISYRISLEKCSFAEILDAYRKRGIARKKRENLHGLASTNRSFAHFRWW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATMG01270 ATMG01270.1, RP... mitochondrial ribosomal protei... Potri.007G061841
[exp]
0 1
Potri.007G062222
[exp]
9.74 0.7405
Potri.013G066680
[exp]
10.09 0.7081
Potri.001G473250
[exp]
11.66 0.6625
Potri.007G061901
[exp]
36.60 0.6796
ATMG01320 NAD2.2, ATMG013... NADH DEHYDROGENASE 2.2, NADH d... Potri.007G062482
[exp]
53.16 0.6559
Potri.007G061741
[exp]
63.61 0.6350
ATMG00160 ATMG00160.1, CO... cytochrome oxidase 2 (.1) Potri.007G061781
[exp]
68.00 0.6369
AT4G10950 SGNH hydrolase-type esterase s... Potri.007G062342
[exp]
70.48 0.5363
AT4G32150 ATVAMP711, VAMP... vesicle-associated membrane pr... Potri.018G125900
[exp]
101.05 0.5504
AT1G04645 Plant self-incompatibility pro... Potri.018G148630
[exp]
101.96 0.5504

Potri.007G061841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.