Plant FIBer expression Database

Potri.007G062102 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G062102.1 pacid=42765063 polypeptide=Potri.007G062102.1.p locus=Potri.007G062102 ID=Potri.007G062102.1.v4.1 annot-version=v4.1
ATGATGAGCATCTATTTGAGTCGATCATTTCCAAGATCTAATTCCAGTTTTTTTTTATGTAGTGGAAACGCCTTACAATCTGAAGTTTTACGCTTAAGGG
AAGAAATGTTCTTGGTAAATGCAGGACTTGGGACCCCCAGAATTTGTATGCAAGATGAGCTTACAGGAGTGCCAATCAACCGAGCCACCAGGTTCACGAA
TAAAGTGGGATTCCTGGCCGGTGAATCACTGATCAAAGAGCGAGCAGCCACCTGGTTTAAGGATTTGGTGGGATCTACAGATGTAGTGGCCGGTGAACCG
CTTCTTCTTCTTCCACGAAAATTCAGACAAAACCGAGCTTGGATGGAACTGAACAAGATTTGGCGAACGAAGAAAAAGAAAAAGGTCAAAGGCTTTATTT
TAAAGAAAAAGGTCAAAGTCAAAGGCTTGAAAAGAAAAAGAGGTTATTTAGTACAAGTAGCCATCGCAGGTTTCATTACTTTTTGTAGACGAAATAAAAT
AAGGAAAAAGATATTGAATGATCGATTCACATTCACCATTAAGAGCATAAAAAGCAAAAGGACGAAGATTGTGTTGAAAAGCGGAAGATCAAACATTGAT
GAGCGTGACGAAAAAAAAAAGAAAATTATAAAATAA
AA sequence
>Potri.007G062102.1 pacid=42765063 polypeptide=Potri.007G062102.1.p locus=Potri.007G062102 ID=Potri.007G062102.1.v4.1 annot-version=v4.1
MMSIYLSRSFPRSNSSFFLCSGNALQSEVLRLREEMFLVNAGLGTPRICMQDELTGVPINRATRFTNKVGFLAGESLIKERAATWFKDLVGSTDVVAGEP
LLLLPRKFRQNRAWMELNKIWRTKKKKKVKGFILKKKVKVKGLKRKRGYLVQVAIAGFITFCRRNKIRKKILNDRFTFTIKSIKSKRTKIVLKSGRSNID
ERDEKKKKIIK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.007G062102
[exp]
0 1
ATCG00900 ATCG00900.1, RP... CHLOROPLAST RIBOSOMAL PROTEIN ... Potri.011G084201
[exp]
4.35 0.9660
ATCG00900 ATCG00900.1, RP... CHLOROPLAST RIBOSOMAL PROTEIN ... Potri.011G075200
[exp]
11.87 0.9591
ATCG00905 ATCG00905.1, RP... ribosomal protein S12C (.1) Potri.008G208300
[exp]
13.03 0.8486
ATCG00900 ATCG00900.1, RP... CHLOROPLAST RIBOSOMAL PROTEIN ... Potri.013G138900
[exp]
14.00 0.9573
ATCG00180 ATCG00180.1, RP... DNA-directed RNA polymerase fa... Potri.013G140850
[exp]
19.18 0.9465
Potri.008G224183
[exp]
20.92 0.9088
AT5G06790 unknown protein Potri.006G191100
[exp]
28.98 0.9342
Potri.011G074501
[exp]
32.03 0.9328
ATCG01130 ATCG01130.1, YC... Ycf1 protein (.1) Potri.013G075232
[exp]
33.70 0.9335
ATMG00520 ATMG00520.1, MA... Intron maturase, type II famil... Potri.007G062302
[exp]
35.09 0.8985

Potri.007G062102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.