Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATMG00520 1095 / 0 ATMG00520.1, MATR Intron maturase, type II family protein (.1) AT1G74350 64 / 2e-10 Intron maturase, type II family protein (.1) AT5G04050 59 / 9e-09 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) AT1G30010 43 / 0.0006 Intron maturase, type II family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G043650 [exp] 99 / 2e-21 AT5G04050 742 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) Potri.005G063750 [exp] 81 / 1e-15 AT1G74350 877 / 0.0 Intron maturase, type II family protein (.1) Potri.004G132450 [exp] 48 / 2e-05 AT1G30010 988 / 0.0 Intron maturase, type II family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038971 [exp] 90 / 2e-18 AT5G04050 704 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) Lus10027263 [exp] 87 / 1e-17 AT5G04050 690 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) Lus10036278 [exp] 70 / 4e-14 AT5G04050 87 / 8e-21 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) Lus10021359 [exp] 73 / 5e-13 AT1G74350 838 / 0.0 Intron maturase, type II family protein (.1) Lus10042828 [exp] 45 / 0.0002 AT1G30010 617 / 0.0 Intron maturase, type II family protein (.1) Lus10028124 [exp] 44 / 0.0004 AT1G30010 1011 / 0.0 Intron maturase, type II family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0359 [poplar] [flax] Intron-mat_II PF01348 [poplar] [flax] Intron_maturas2 Type II intron maturase
Representative CDS sequence Show only first row Show all	>Potri.007G062302.1 pacid=42765169 polypeptide=Potri.007G062302.1.p locus=Potri.007G062302 ID=Potri.007G062302.1.v4.1 annot-version=v4.1 ATGAAAGAGGCGATCAGAATGGTACTCGAATCCATTTATGATCCCGAGTTTCCAGACACATCGCACTTCCGCTCGGGTCGAGGCTGCCACTCGGTCCTAA GACGGATCAAAGAAGAATGGAGAACCTCTCGCTGGTTTTTAGAATTCGACATCAGGAACTGTTTTCACACCATCGACCGACATCGACTCATCTCAATCTT TAAGGAAGAGATCGACGATCCCAAGTTCTTTTACTCCATTCAGAAAGTCTTTTCCGCCGGACGACTCGTAGGAGGTGAGAAGGGCCCTTACTCCGTCCTA CACAGTGTACTACTAAAGGCCCTACTAGGCAACATCTACCTACACAAGCTCGATCAGGAGATAGGGAGGATCCGACAGAAGTACGAAATTCCGATTGTTC AGAGAATCAGATTGGTTCTATTAAGGACAGGTCGTATTGATGACCAAGAAAATTCTGGAGAAGAAGCAAGCTTCAACGCTCCCCAAGGCAACAGAGCCAT CATTGTGGGGAGTGTAAAGAGCATCCAACGCAAAGCGGCCTTTCATTCCCTTGTTTCGTCGTGGCACACCTCCCCCACAAGCACCCCCCGGCCCAGGGGA GACCAGAAAACGCCTTTCGTTTTCCCCCCTTCGTCGGCACTTGCCGCCTTCCTTAACAAGCCCTCGAGCCTCCTTTGCGCCGCCTTCCTCATAGAATCCG CCGGCCCGAAGGCCGAATTCTATGGTAGAGAACGCTGTAATTGGGCCATGAGAGACCTTTTTAAGTATTGCAAAAGAAAGGGCCTGCTGATAGAGTTGGG CGGGGAGGCGATACTAGTTATCAGGTCAGAGAGACGCCTGGCCCGTAAGCTGGCCCCCTTAAAAACCCATTACTTAAGAAATCTTTCTTACGCGCGATAT GCCGACGACTTACTACTGGGAATCGTAGGTGCCGTAGAGCTTCTCATAGAAATACAAAAACGTATCGCCCAATTCCTACAATCCGGCCTGAACCTTTGGG TAGGCTCAGAAGGATCAACAACAATAGCTGCACGGAGTACGGTAGAATTCCTTGGTACGGTCATTCGGGAAGTTCCTCCGAGGACGACTCCCATACAATT CTTTCGAGAGCTGGAGAAGCGTCTACGGGTAAAGCACCGTATCCATATAACTGTTTGCCACCTACGCTCCGCCATCCATTCCAAGTTTAGGAACCTAGGT AAGAGTATCCCGAAGCTGACGAAGGAGATGAGCGAAACAGGGAGTCTACTGGACGGGATTCAACTAGCTCCGACTCTTGGAACAGCTGGAGTAAGAAGTC CCCAAGTGAGCGTATTATGGGGGACCGTCAAGCACATCCGGCAAGGATCAAGGGGGATCTCGTTGTTGCATAGCTCAGGTCGGAGCAACGCGCCATCGGA CGTTCAACAGGCAGTCTCACGATCGGGCATGAGTGTCCGGAAGTTGTCATTGCCCGCGGGTCGGAAGGCGGCGGGAGAAGGAGGAGGACACTGGGCGGAA TCTATCAGCAGCGAATTCTCTATACAGATAGAGGCGCCTATCAAAAAGATACTCCGAAGGCTTCGGGATCGAGGTATCATTAGCCGAATAAGACCCTGGC CAATCCACGTGGCCTGCTTGACGAGCGTCAGCGACGGAGAAATCGTAAATTGGTTCGCGGGCATCGCGATAAGTCTTATGTCCTACTACAGGTGCTGCGA CAACCTTTATCAAGTCAGAACGATTGTCGACTACCAGATCCGCTGGTCTGCAATATTCACCCTAGCCCACAAGCACAAATCCTCGGCGCGGAATATAATC CTAAAGTACTCCAAAGACTTAAAAATAGTAAATAAAGAAGGTGGTAAGACCCTTGCAGAGTTCCCCAACAGCATAGAGCTTGGGAAGCTCGGACCCGGTC AAGATCCGAATAAGAACTCGCACTCAACTACTAGTCTAGTCTAG
AA sequence Show only first row Show all	>Potri.007G062302.1 pacid=42765169 polypeptide=Potri.007G062302.1.p locus=Potri.007G062302 ID=Potri.007G062302.1.v4.1 annot-version=v4.1 MKEAIRMVLESIYDPEFPDTSHFRSGRGCHSVLRRIKEEWRTSRWFLEFDIRNCFHTIDRHRLISIFKEEIDDPKFFYSIQKVFSAGRLVGGEKGPYSVL HSVLLKALLGNIYLHKLDQEIGRIRQKYEIPIVQRIRLVLLRTGRIDDQENSGEEASFNAPQGNRAIIVGSVKSIQRKAAFHSLVSSWHTSPTSTPRPRG DQKTPFVFPPSSALAAFLNKPSSLLCAAFLIESAGPKAEFYGRERCNWAMRDLFKYCKRKGLLIELGGEAILVIRSERRLARKLAPLKTHYLRNLSYARY ADDLLLGIVGAVELLIEIQKRIAQFLQSGLNLWVGSEGSTTIAARSTVEFLGTVIREVPPRTTPIQFFRELEKRLRVKHRIHITVCHLRSAIHSKFRNLG KSIPKLTKEMSETGSLLDGIQLAPTLGTAGVRSPQVSVLWGTVKHIRQGSRGISLLHSSGRSNAPSDVQQAVSRSGMSVRKLSLPAGRKAAGEGGGHWAE SISSEFSIQIEAPIKKILRRLRDRGIISRIRPWPIHVACLTSVSDGEIVNWFAGIAISLMSYYRCCDNLYQVRTIVDYQIRWSAIFTLAHKHKSSARNII LKYSKDLKIVNKEGGKTLAEFPNSIELGKLGPGQDPNKNSHSTTSLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATMG00520		ATMG00520.1, MA...	Intron maturase, type II famil...		Potri.007G062302 [exp]	0	1
ATMG01330		ATMG01330.1, OR...	unknown protein		Potri.007G062502 [exp]	2.44	0.9521
					Potri.007G061961 [exp]	3.16	0.9610
					Potri.007G062562 [exp]	3.16	0.9348
					Potri.007G061941 [exp]	4.47	0.9389
ATMG00580		ATMG00580.1, NA...	NADH dehydrogenase subunit 4 (...		Potri.007G061861 [exp]	8.48	0.9190
					Potri.008G224183 [exp]	13.85	0.8962
AT5G64150			RNA methyltransferase family p...		Potri.001G003632 [exp]	25.69	0.7865
AT5G55860			Plant protein of unknown funct...		Potri.016G005200 [exp]	27.22	0.8506
AT5G24580			Heavy metal transport/detoxifi...		Potri.012G007300 [exp]	27.92	0.8104
					Potri.002G006800 [exp]	30.74	0.8064

Compare expression of checked genes

Potri.007G062302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.