Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10950 337 / 7e-116 SGNH hydrolase-type esterase superfamily protein (.1) AT1G71691 140 / 2e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G37690 130 / 7e-36 SGNH hydrolase-type esterase superfamily protein (.1) AT1G29660 128 / 4e-35 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 126 / 2e-34 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 125 / 4e-34 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 125 / 4e-34 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 123 / 3e-33 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 120 / 5e-32 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71250 120 / 6e-32 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G141300 [exp] 441 / 9e-157 AT4G10950 535 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.009G157800 [exp] 167 / 1e-49 AT4G10950 233 / 5e-73 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 149 / 3e-43 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.017G130100 [exp] 146 / 5e-42 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G064500 [exp] 126 / 2e-34 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G076600 [exp] 125 / 5e-34 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G102500 [exp] 125 / 7e-34 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G076500 [exp] 119 / 8e-32 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104600 [exp] 119 / 8e-32 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001532 [exp] 367 / 8e-128 AT4G10950 544 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10032399 [exp] 327 / 3e-112 AT4G10950 495 / 1e-175 SGNH hydrolase-type esterase superfamily protein (.1) Lus10023070 [exp] 166 / 1e-51 AT4G10950 163 / 5e-49 SGNH hydrolase-type esterase superfamily protein (.1) Lus10026771 [exp] 145 / 2e-41 AT4G10950 199 / 8e-60 SGNH hydrolase-type esterase superfamily protein (.1) Lus10001540 [exp] 138 / 8e-40 AT1G71691 393 / 2e-137 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10011998 [exp] 138 / 9e-39 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039877 [exp] 138 / 9e-39 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10002775 [exp] 136 / 4e-38 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 135 / 6e-38 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 134 / 3e-37 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.007G062342.1 pacid=42764972 polypeptide=Potri.007G062342.1.p locus=Potri.007G062342 ID=Potri.007G062342.1.v4.1 annot-version=v4.1 ATGGGAACTGTTGAAGATATGACTAAAGGGGTCAATTATGCATCTGCTGGTGCTGGAGTTATATTCTCAAGTGGATCAGAACTGGGTCAACGAATCTCCT TCACGCAGCAAATTCAGCAGTTCACGGATACTTTGCAGTCTTTTATTTTGAACATGGGCGAGGCTGCTGCGAATGAGCTCATCTCGAACTCAGTCTTTTA TGTTTCTATTGGAGTCAATGACTACATACATTACTATTTGCGTAATGTATCCAATATCCAAAACCTGTATCTACCATGGAGCTTCAACCAGTTTGTTGCA GCGGCAGGAAATAAAGAACAGAACTTGTACAATATGAATGTCAGGAAAGTAATTCTCATGGGGCTGCCACCTATTGGCTGTGCTCCATACTATTTGTGGA GGTACAACAGCAAGAATGGGGAGTGCATTGAGGAGATAAATGACATGATTCTGGAGTACAACTTTGTAATGAGATATATGATTGAAGAGCTAGGTCTGGA ACTTCCTGATGCCAAAATCACCTTCTGTGATATGTATGAAGGTTCGATGGATATAATAAAGAACCATGAACTCTATGGTTTTAATGTCACTACTGATGCT TGCTGTGGGTTAGGAAAGTATAAGGGATGGATCATGTGCTTTGCATCAGAAATTGCTTGCAGCAATGCAACCAACCCGGTGGGATCAATACCATCCAACT GA
AA sequence Show only first row Show all	>Potri.007G062342.1 pacid=42764972 polypeptide=Potri.007G062342.1.p locus=Potri.007G062342 ID=Potri.007G062342.1.v4.1 annot-version=v4.1 MGTVEDMTKGVNYASAGAGVIFSSGSELGQRISFTQQIQQFTDTLQSFILNMGEAAANELISNSVFYVSIGVNDYIHYYLRNVSNIQNLYLPWSFNQFVA AAGNKEQNLYNMNVRKVILMGLPPIGCAPYYLWRYNSKNGECIEEINDMILEYNFVMRYMIEELGLELPDAKITFCDMYEGSMDIIKNHELYGFNVTTDA CCGLGKYKGWIMCFASEIACSNATNPVGSIPSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10950			SGNH hydrolase-type esterase s...		Potri.007G062342 [exp]	0	1
					Potri.007G062021 [exp]	1.41	0.7306
					Potri.013G066680 [exp]	4.24	0.7405
					Potri.015G030750 [exp]	13.41	0.6782
					Potri.004G194250 [exp]	26.26	0.6197
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Potri.005G098700 [exp]	37.22	0.5653
					Potri.005G149001 [exp]	48.00	0.5768
AT3G12410			Polynucleotidyl transferase, r...		Potri.002G185500 [exp]	48.27	0.5805
					Potri.007G061741 [exp]	48.55	0.5893
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Potri.008G189000 [exp]	51.84	0.5768
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.016G048100 [exp]	56.77	0.5799

Compare expression of checked genes

Potri.007G062342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.