Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATMG00640 66 / 2e-14 ATMG00640.1, ORF25 hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G062602 [exp] 69 / 2e-15 ATMG00640 246 / 1e-83 hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding (.1) Potri.007G061641 [exp] 69 / 2e-15 ATMG00640 246 / 1e-83 hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0255 [poplar] [flax] ATP_synthase PF05405 [poplar] [flax] Mt_ATP-synt_B Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
Representative CDS sequence Show only first row Show all	>Potri.007G062422.1 pacid=42765102 polypeptide=Potri.007G062422.1.p locus=Potri.007G062422 ID=Potri.007G062422.1.v4.1 annot-version=v4.1 ATGCTGTTAGTTGGTAAACAACCAACCAACTTTTTCTCTATAGTTCTTCACTACTCACTAAGTAAGGGGGTCTCTTTCTTTCTCTGGGGGGAATCATTTT TTCTCAATCAAGCCTCAATTCTTTTTTCAAATGCAGCGACTAGAAAGATGTTATTTGCTGCTATTCTATCTATTTGTACATTAAGTTCGAAGAAGATCTT AATCTATAATGAAGAAATCATAGTAGCTCCTTCTTCTCTAGGCTTTATTCGGAAGAGTTTAGGTAAGACTTGCAAAGAAAGGCTCGACAGGAGAGGCTAT TCAGGAAGAACCGCAGCCCCTTTCTGGGCTTAG
AA sequence Show only first row Show all	>Potri.007G062422.1 pacid=42765102 polypeptide=Potri.007G062422.1.p locus=Potri.007G062422 ID=Potri.007G062422.1.v4.1 annot-version=v4.1 MLLVGKQPTNFFSIVLHYSLSKGVSFFLWGESFFLNQASILFSNAATRKMLFAAILSICTLSSKKILIYNEEIIVAPSSLGFIRKSLGKTCKERLDRRGY SGRTAAPFWA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATMG00640		ATMG00640.1, OR...	hydrogen ion transporting ATP ...		Potri.007G062422 [exp]	0	1
AT2G27940			RING/U-box superfamily protein...		Potri.010G245801 [exp]	20.71	0.7336
					Potri.007G062162 [exp]	22.09	0.8608
					Potri.008G225101 [exp]	22.71	0.8709
AT2G07751			NADH:ubiquinone/plastoquinone ...		Potri.007G062001 [exp]	26.32	0.8641
ATMG01320		NAD2.2, ATMG013...	NADH DEHYDROGENASE 2.2, NADH d...		Potri.007G062442 [exp]	34.29	0.8553
AT1G16820			vacuolar ATP synthase catalyti...		Potri.005G107066 [exp]	36.08	0.8348
ATCG00080		ATCG00080.1, PS...	photosystem II reaction center...		Potri.015G020100 [exp]	36.37	0.7136
ATMG01010		ATMG01010.1, OR...	Unknown conserved protein (.1)		Potri.007G062262 [exp]	36.85	0.8546
AT2G07689			NADH-Ubiquinone/plastoquinone ...		Potri.007G062522 [exp]	38.34	0.8546
ATMG01275		ND1, ATMG01275....	NAD\(P\)H DEHYDROGENASE 1, NAD...		Potri.007G061981 [exp]	40.39	0.8513

Compare expression of checked genes

Potri.007G062422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.