Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42120 94 / 7e-23 Concanavalin A-like lectin protein kinase family protein (.1) AT1G15530 72 / 3e-15 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 72 / 3e-15 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 69 / 3e-14 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 69 / 3e-14 Concanavalin A-like lectin protein kinase family protein (.1) AT1G31420 67 / 1e-13 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT5G16000 67 / 1e-13 NIK1 NSP-interacting kinase 1 (.1) AT3G19700 66 / 5e-13 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1) AT1G09970 65 / 8e-13 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT2G35620 65 / 9e-13 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G189500 [exp] 94 / 8e-23 AT5G42120 671 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G368300 [exp] 73 / 1e-15 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G087800 [exp] 71 / 7e-15 AT3G53380 881 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G130000 [exp] 71 / 8e-15 AT3G53380 866 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.015G083300 [exp] 70 / 1e-14 AT1G15530 759 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G093700 [exp] 68 / 8e-14 AT5G55830 849 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G058100 [exp] 67 / 1e-13 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.004G108200 [exp] 67 / 2e-13 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.017G108000 [exp] 66 / 4e-13 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029769 [exp] 99 / 1e-24 AT5G42120 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10042795 [exp] 99 / 2e-24 AT5G42120 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016620 [exp] 73 / 2e-15 AT5G55830 826 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10022521 [exp] 70 / 2e-15 AT5G55830 263 / 9e-85 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014037 [exp] 72 / 3e-15 AT1G15530 807 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10019923 [exp] 71 / 1e-14 AT3G53380 927 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10026493 [exp] 71 / 1e-14 AT3G53380 872 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 69 / 3e-14 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033291 [exp] 67 / 2e-13 AT1G31420 769 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10040276 [exp] 67 / 2e-13 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.007G062462.1 pacid=42765685 polypeptide=Potri.007G062462.1.p locus=Potri.007G062462 ID=Potri.007G062462.1.v4.1 annot-version=v4.1 ATGCAATATAATGCTGGATGCAGACTTTACTGCCAAGCTTGGCTTGGGGATTTTGGTCTGGCAGAAGTTTACGAGCATAGTTCCAACACAAGAGAGGTAA CTATACCGCCGGCTGGAAGGATGGGATATCTTGCTCCTGAATATGTATACTCTGCCGTCCCCACGGAGAAAACTTATGTTTACAGCTTTGGTGTTGTGGT GCTAGAGGTGGCCACGGGAAGAAGGCCAGTCGATGATGATGGAACTGTGGTTGTTGATTGGGTCTGGGACCTCCGGGAGAAGGGCAAAAAGAGGCCGCGG ATGCTGAAAGACCGGATTCTATACCAGCGGATTCGAGAGCAGCGGAGTGGCCTTCTCCTACTCCTTGCCTTCCTTCTTCCCCATGTTGATTCTAAACCGT CGCCTTCCCCAGCTTGTTCTCTGTCCGCCCTATTCTGGCTAACAGCCTATTTGTACTAA
AA sequence Show only first row Show all	>Potri.007G062462.1 pacid=42765685 polypeptide=Potri.007G062462.1.p locus=Potri.007G062462 ID=Potri.007G062462.1.v4.1 annot-version=v4.1 MQYNAGCRLYCQAWLGDFGLAEVYEHSSNTREVTIPPAGRMGYLAPEYVYSAVPTEKTYVYSFGVVVLEVATGRRPVDDDGTVVVDWVWDLREKGKKRPR MLKDRILYQRIREQRSGLLLLLAFLLPHVDSKPSPSPACSLSALFWLTAYLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42120			Concanavalin A-like lectin pro...		Potri.007G062462 [exp]	0	1
					Potri.002G047750 [exp]	15.81	0.6940
					Potri.009G014750 [exp]	16.52	0.6937
					Potri.001G298600 [exp]	19.07	0.6407
AT2G32440		ATKAO2, CYP88A4...	ARABIDOPSIS ENT-KAURENOIC ACID...		Potri.001G144933 [exp]	21.44	0.6876
					Potri.002G111832 [exp]	25.29	0.6865
					Potri.012G119350 [exp]	29.58	0.6857
					Potri.001G020250 [exp]	31.62	0.6857
					Potri.004G103350 [exp]	39.49	0.6438
					Potri.008G139250 [exp]	40.47	0.6669
					Potri.018G043850 [exp]	41.41	0.6173

Compare expression of checked genes

Potri.007G062462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.