Plant FIBer expression Database

Potri.007G062642 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G061681
[exp]
260 / 2e-91 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G062642.1 pacid=42765070 polypeptide=Potri.007G062642.1.p locus=Potri.007G062642 ID=Potri.007G062642.1.v4.1 annot-version=v4.1
ATGCTCTTGACTTTGCATATAGGTCCTGTAGTTATAGCCAGACTCTCTTACTTCCTTGAATACAGATTGTACTTCTCGATAAGATATGAGTCCTATGAGA
TTATTGTCCTGTTCTTACACCATAGAAGAAGTTGGGATGGTAAAGGACAAAGAGCTAAGGTACTTGCTCTTGAAGAAGAAGTCATCAATACAATGCAGCA
AGTCCTTGGGGCAGTTGAATGCAGAAAGAACATGGATTCCCAGATCCACACTTTCATTCAGAAATCCACCAAAGCTCGAGAGTCCGTGGAAAAATGTGAA
CAAATGAAATGGAGAGGGATCCGATCCGGATGGATGCTAAGGTTGAGAATCAATCTGAAGAACCAAATGGAGAAGCTTTGA
AA sequence
>Potri.007G062642.1 pacid=42765070 polypeptide=Potri.007G062642.1.p locus=Potri.007G062642 ID=Potri.007G062642.1.v4.1 annot-version=v4.1
MLLTLHIGPVVIARLSYFLEYRLYFSIRYESYEIIVLFLHHRRSWDGKGQRAKVLALEEEVINTMQQVLGAVECRKNMDSQIHTFIQKSTKARESVEKCE
QMKWRGIRSGWMLRLRINLKNQMEKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Download tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.007G062642
[exp]
0 1
Potri.007G061681
[exp]
1.00 0.9180
AT5G05800 unknown protein Potri.010G132850
[exp]
15.87 0.6176
AT4G21410 CRK29 cysteine-rich RLK (RECEPTOR-li... Potri.011G030300
[exp]
25.98 0.5927
AT1G52950 Nucleic acid-binding, OB-fold-... Potri.001G165480
[exp]
26.73 0.6273
AT4G21410 CRK29 cysteine-rich RLK (RECEPTOR-li... Potri.011G030212
[exp]
29.32 0.5842
AT1G13790 FDM4 factor of DNA methylation 4, X... Potri.001G240666
[exp]
33.70 0.6125
AT1G68800 TCP TCP12, BRC2, TC... BRANCHED 2, TCP domain protein... Potri.015G050500
[exp]
42.42 0.6091
AT3G63230 Protein of unknown function (D... Potri.002G050100
[exp]
107.41 0.5218
AT3G56960 PIP5K4 phosphatidyl inositol monophos... Potri.016G036800
[exp]
138.82 0.5240

Potri.007G062642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.