Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17220 468 / 3e-164 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT4G35600 463 / 3e-162 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT1G76360 429 / 1e-147 Protein kinase superfamily protein (.1) AT2G28930 413 / 1e-142 APK1B protein kinase 1B (.1.2.3) AT1G07570 410 / 2e-141 APK1A Protein kinase superfamily protein (.1.2.3) AT5G02290 409 / 3e-141 NAK Protein kinase superfamily protein (.1.2) AT2G02800 396 / 1e-135 Kin2, APK2B protein kinase 2B (.1.2) AT1G14370 391 / 8e-134 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT3G55450 389 / 1e-133 PBL1 PBS1-like 1 (.1.2) AT2G39660 387 / 8e-133 BIK1 botrytis-induced kinase1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G100900 [exp] 702 / 0 AT2G17220 462 / 6e-162 kinase 3, Protein kinase superfamily protein (.1.2) Potri.009G167400 [exp] 513 / 0 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.004G206100 [exp] 506 / 3e-179 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.005G251900 [exp] 465 / 2e-162 AT1G76360 483 / 1e-168 Protein kinase superfamily protein (.1) Potri.002G009400 [exp] 452 / 5e-157 AT1G76360 461 / 1e-159 Protein kinase superfamily protein (.1) Potri.016G094300 [exp] 423 / 7e-147 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 420 / 3e-145 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.008G056400 [exp] 419 / 4e-145 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 419 / 4e-145 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024512 [exp] 527 / 0 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10008015 [exp] 519 / 0 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10023000 [exp] 466 / 3e-163 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10001392 [exp] 461 / 2e-161 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10026546 [exp] 477 / 4e-159 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 478 / 2e-153 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012256 [exp] 436 / 3e-151 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10024391 [exp] 432 / 2e-150 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 431 / 2e-150 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 432 / 3e-150 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.007G062700.1 pacid=42766545 polypeptide=Potri.007G062700.1.p locus=Potri.007G062700 ID=Potri.007G062700.1.v4.1 annot-version=v4.1 ATGGGCAATTGCCTTAGATCTCTCTTTAATGATCCTAGCACTCCTAGCTCCATAGCCAACAACGATCCTGCCACCTCAGGGACATCTAAAATCAATTACA GCAACACCACCATAGATTTCTCAGCCACAAGTGGCAGTACTGCTTGCAAGAGTCAATTCTCTGAGGCAGTGAGTCATGATGAAGGAAATGAAGCGACAAA TAATCCAAATGGACAAATATTGGAATCACCAAACTTGAAGGAGTTCACTTTTGCAGATTTGAAGAGTACAACAAAGAATTTTAAATCAGATACTTTGTTG GGCGAGGGAGGTTTTGGTAAAGTCTATAAAGGTTGGATTGATGAGAGGACTTATGCACCCTCTAAGTCTGGCAGTGGCATGGTCGTTGCTATCAAGAAAT TGAACCCAGAAAGTGTGCAAGGGTTTCAAGAGTGGCAGTCAGAGGTGAACTTTCTAGGAAGGCTATCACACCCCAATTTGGTTAAGTTATTGGGCTATTG TTGGGAGGATAAAGAGCTACTCCTTGTGTATGAGTTTATGCAGAAGGGAAGCTTGGAGAACCATCTTTTTAGAAAGAATCCTAATATTGAACCCCTCTCT TGGGATATACGGCTAAAGATAGCCGTTGGAGCAGCTAGAGGTCTAACTTTCCTGCATACTTCGGACAAGAAAGTCATTTATAGAGATTTCAAGGCCTCTA ATATCCTGCTGGATGGGAACTACAATGCCAAAATATCAGATTTTGGCTTGGCGAAATTGGGGCCTTCGGGTGGAGAGTCACATGTGACAACCAGGGTCAT GGGAACTTATGGTTATGCTGCTCCTGAGTACATTGCAACAGGTCATTTATATGTAAAGAGTGATGTGTATGGTTTTGGCGTTGTGCTACTTGAAATGCTG TCAGGCCGAAGGGCACTTGATACAAAGCGGCCGACTGGTCAGCAAAATTTGATCGAATGGTTAAAGCCATTGCTTTCACAAAAAAAGAAGCTCAAAACCA CCATCATGGATGCAAGGATCGAGGGCCAATATTCATCCAAGGCAATGGTACAAGCAGCACAGCTTACTTTAAAGTGCCTGGAAGCAGATCCTAAAAACAG GCCCTCCATGAAAGAAGTTTTAGAGGTGTTGGAACAGATAGAGGCAATGAAGGAAAAACCAAAGGCAACCAAAAGCACTTTTGGTTCCTCGCTGTCGGAA CCCCATCGCAGAGGCCAACAACCAAACCTGCATCGTTTTCCGTTTCATTCCAGGTCAAATGAGCAGGAAACATTCAAAAACAACAAAAAGAAGTAA
AA sequence Show only first row Show all	>Potri.007G062700.1 pacid=42766545 polypeptide=Potri.007G062700.1.p locus=Potri.007G062700 ID=Potri.007G062700.1.v4.1 annot-version=v4.1 MGNCLRSLFNDPSTPSSIANNDPATSGTSKINYSNTTIDFSATSGSTACKSQFSEAVSHDEGNEATNNPNGQILESPNLKEFTFADLKSTTKNFKSDTLL GEGGFGKVYKGWIDERTYAPSKSGSGMVVAIKKLNPESVQGFQEWQSEVNFLGRLSHPNLVKLLGYCWEDKELLLVYEFMQKGSLENHLFRKNPNIEPLS WDIRLKIAVGAARGLTFLHTSDKKVIYRDFKASNILLDGNYNAKISDFGLAKLGPSGGESHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEML SGRRALDTKRPTGQQNLIEWLKPLLSQKKKLKTTIMDARIEGQYSSKAMVQAAQLTLKCLEADPKNRPSMKEVLEVLEQIEAMKEKPKATKSTFGSSLSE PHRRGQQPNLHRFPFHSRSNEQETFKNNKKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.007G062700 [exp]	0	1
AT2G28330			unknown protein		Potri.016G142100 [exp]	4.24	0.8299
					Potri.019G015800 [exp]	5.56	0.8378
AT4G36550			ARM repeat superfamily protein...		Potri.005G122100 [exp]	9.16	0.7852
AT3G07790			DGCR14-related (.1)		Potri.002G222100 [exp]	17.32	0.8186
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Potri.002G245400 [exp]	19.69	0.8318	RIN4.1
AT2G38610			RNA-binding KH domain-containi...		Potri.013G159800 [exp]	21.81	0.8145
AT4G19640		ATRAB-F2B, ARA7...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.003G054900 [exp]	23.45	0.8196
AT1G21380			Target of Myb protein 1 (.1)		Potri.005G184900 [exp]	26.53	0.8135
AT5G48655			RING/U-box superfamily protein...		Potri.003G148300 [exp]	27.49	0.8266
AT2G01650		PUX2	plant UBX domain-containing pr...		Potri.008G133700 [exp]	28.10	0.8126

Compare expression of checked genes

Potri.007G062700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.