Plant FIBer expression Database

Potri.007G063000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35510 66 / 7e-12 unknown protein
AT2G17540 45 / 3e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G102000
[exp]
402 / 2e-139 AT4G35510 58 / 3e-09 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035988
[exp]
124 / 1e-32 AT4G35510 107 / 1e-26 unknown protein
Lus10016694
[exp]
123 / 3e-32 AT4G35510 108 / 2e-27 unknown protein
PFAM info
Representative CDS sequence
>Potri.007G063000.1 pacid=42766612 polypeptide=Potri.007G063000.1.p locus=Potri.007G063000 ID=Potri.007G063000.1.v4.1 annot-version=v4.1
ATGGAGGCTAACATATGTGACATCAATCACTTGGATGCTGATGTCCTTTTGCCTCCTCGAAAGCGCCTGCTTGCTGGATTCAAGAAACAGAGTTCTGATG
GTGATGGTGCTTCGCTTCTTCCTGTAGTTGGTTCCTCTTCATCTTCAGCATCTCCTGCTTCTCCATCTCCCCAGTCTCCTCCTTCCCCGACACCTTGTTC
TCCTTCTTCAAGTGAATTTCAGGCACGTCTTAACAAGCTGTTGAGTTCCCATTTTAATAATAGTCATAACCTTTCACCTGAGCAGATTGTGGAGGCCTCA
AAATCAGCAGCTGAGGCTGCTGTTAAGGCTGCAGAGGCTGCAAGAGCAGCGGCTCAGGAGAAGGAAATTAGTGCAGCAAAAGCTGTGACAGCTGCCAAGA
GTGCTTTAGCTTTAGTTGCATCATTTCCTGAAGAGGCAGCTAGCAAGGATAAATACCTGAGAAAGAATAAGTTGAAGAAGCATGTCCAAGTTCAGCTCTT
GTACAAAAAACACCAACCAGTTGAGAATTATAGGGATGATGAAGAATTAGCTCGTAAGTTGCATCGCGTTATAAACAGCTCGCCAAGAATTTCGAAGAAT
TCTTCCAGTTCTGACTTGAAGGGTGGTCATAGAAATAAGAAGCCTAAAAGCTCAACAAGTTCGGAAAGAACTAAGGTTTCAAATGGAAGTATAATTTTCG
GAGAAAACCCACCTTCTTTTTGCAATGGGCATGCCATAGCTGGTGAGTTGGATTCTGATGATTCTATCCAGGAGGCACCCATAAGAATACCTGATGAGAA
GGCACTGAAATATGAAAAAGCTGGCCAATTAGACATGGATAATGGGGAAGCAGAGTCAAGTCACTCGAAGGAGAAAAACTGGGGGGATTCGGGTTCGCCT
AGTAAAAAGAAGGGAAGACTGAAACTGAAGAAGTTGCCATTAAGCGTTTGTAATTCTAAGGATCAATCAAACCCCAAGGAAGATAGTCTTCCTAGAAGCC
TCCCATTGACTGATAAGAACACGGGTAATCCTGCTACTACTCGTGTTAAGCCTTTGTTTCCAATGGAGCCTTCTACTGGTACTCTAATGCAAATTGAACC
TACACCACTGTGGAAATGCCAGGAGTTCAAAGCACCTGCATGTGTCAAACAGAATAAAGTCGTGCAGTCGTAA
AA sequence
>Potri.007G063000.1 pacid=42766612 polypeptide=Potri.007G063000.1.p locus=Potri.007G063000 ID=Potri.007G063000.1.v4.1 annot-version=v4.1
MEANICDINHLDADVLLPPRKRLLAGFKKQSSDGDGASLLPVVGSSSSSASPASPSPQSPPSPTPCSPSSSEFQARLNKLLSSHFNNSHNLSPEQIVEAS
KSAAEAAVKAAEAARAAAQEKEISAAKAVTAAKSALALVASFPEEAASKDKYLRKNKLKKHVQVQLLYKKHQPVENYRDDEELARKLHRVINSSPRISKN
SSSSDLKGGHRNKKPKSSTSSERTKVSNGSIIFGENPPSFCNGHAIAGELDSDDSIQEAPIRIPDEKALKYEKAGQLDMDNGEAESSHSKEKNWGDSGSP
SKKKGRLKLKKLPLSVCNSKDQSNPKEDSLPRSLPLTDKNTGNPATTRVKPLFPMEPSTGTLMQIEPTPLWKCQEFKAPACVKQNKVVQS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G35510 unknown protein Potri.007G063000
[exp]
0 1
AT4G35510 unknown protein Potri.005G102000
[exp]
1.00 0.8410
AT5G64560 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) Potri.008G161400
[exp]
1.73 0.7769
AT4G28610 GARP ATPHR1, PHR1 phosphate starvation response ... Potri.002G257800
[exp]
2.23 0.7572
AT4G01840 KCO5, ATTPK5, A... Ca2+ activated outward rectify... Potri.014G113700
[exp]
4.00 0.7623
AT5G25220 HD KNAT3 KNOTTED1-like homeobox gene 3 ... Potri.018G022700
[exp]
4.89 0.7288 Pt-KNAT3.3
AT5G23090 CCAAT NF-YB13 "nuclear factor Y, subunit B13... Potri.012G058200
[exp]
5.83 0.7949 Pt-DR1.2
AT5G22070 Core-2/I-branching beta-1,6-N-... Potri.001G215400
[exp]
6.92 0.7233
AT5G10930 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.... Potri.018G019900
[exp]
8.12 0.6740
AT3G16270 ENTH/VHS family protein (.1) Potri.001G187000
[exp]
10.67 0.6927
AT1G03905 ABCI19 ATP-binding cassette I19, P-lo... Potri.002G036300
[exp]
13.85 0.6980 POP.2

Potri.007G063000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.