Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20760 669 / 0 Calcium-binding EF hand family protein (.1) AT1G21630 619 / 0 Calcium-binding EF hand family protein (.1.2) AT4G05520 76 / 7e-14 ATEHD2 EPS15 homology domain 2 (.1.2) AT3G20290 76 / 1e-13 ATEHD1 EPS15 homology domain 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G102200 [exp] 1852 / 0 AT1G21630 887 / 0.0 Calcium-binding EF hand family protein (.1.2) Potri.002G008600 [exp] 523 / 7e-167 AT1G20760 825 / 0.0 Calcium-binding EF hand family protein (.1) Potri.005G253000 [exp] 484 / 8e-153 AT1G20760 629 / 0.0 Calcium-binding EF hand family protein (.1) Potri.002G008300 [exp] 71 / 2e-14 AT1G20760 57 / 5e-11 Calcium-binding EF hand family protein (.1) Potri.011G022300 [exp] 77 / 3e-14 AT4G05520 876 / 0.0 EPS15 homology domain 2 (.1.2) Potri.001G356300 [exp] 73 / 5e-13 AT3G20290 938 / 0.0 EPS15 homology domain 1 (.1.2) Potri.010G191400 [exp] 44 / 0.0004 AT4G13440 127 / 3e-37 Calcium-binding EF-hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016689 [exp] 1121 / 0 AT1G21630 806 / 0.0 Calcium-binding EF hand family protein (.1.2) Lus10035982 [exp] 634 / 0 AT1G21630 410 / 3e-129 Calcium-binding EF hand family protein (.1.2) Lus10012248 [exp] 629 / 0 AT1G20760 886 / 0.0 Calcium-binding EF hand family protein (.1) Lus10016028 [exp] 556 / 6e-180 AT1G20760 770 / 0.0 Calcium-binding EF hand family protein (.1) Lus10035983 [exp] 286 / 3e-84 AT1G21630 454 / 4e-147 Calcium-binding EF hand family protein (.1.2) Lus10043181 [exp] 79 / 2e-14 AT3G20290 936 / 0.0 EPS15 homology domain 1 (.1.2) Lus10032563 [exp] 78 / 3e-14 AT3G20290 924 / 0.0 EPS15 homology domain 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF12763 [poplar] [flax] EF-hand_4 Cytoskeletal-regulatory complex EF hand
Representative CDS sequence Show only first row Show all	>Potri.007G063200.4 pacid=42765861 polypeptide=Potri.007G063200.4.p locus=Potri.007G063200 ID=Potri.007G063200.4.v4.1 annot-version=v4.1 ATGACAAACTCGAATAATACGGATCTATTCGATTCGTTTTTCAGAAGAGCAGATTTAGACGGTGATGGTCAGATCAGTGGTGCTGAAGCCGTCGGTTTCT TTCAAGGTTCCGGTTTGCCTAAGCACGTCCTTGCTCAGGTGTGGATGCATGCTGACCAGAGGAAAGCAGGCTACCTCGGTCGACAAGAGTTCTATAATGC ACTTAAACTTGTTACTGTGGCACAGAGTAAGCGAGAGTTGACCCCAGAAATAGTGAAGGCAGCATTATATGGTCCTGCTTCAGCTAAAATTCCTGCTCCT CAAGTTAACCTAGCAGCAACTCCTGCTCCTAAAGCATCAGCTCCTGCTCCCCAGCTGGCTGGCACTATGTCAGCAGCATCAACAAATGTTGACATCAGAC CACCACAAGTGCCTGGAAATGCAGTCACAAACCAGCAGTATTTTCCATCCCAGCAAGGCCAATTTATGAGGCAACCCGGACCCCAACCCCAAGCTATGCC TCCTATTTCTGCTTCCCATCCACAACAAATTCTTGTAAGTCAAGGTATGCCCAGGGGAGGTACCATGGCTGCTCCTCGGCCTCTGAATTCAAATATCTCA ACAGATTGGCTTGGTGGAAGTGCTGTTGGCCTGACTTCACAAGCTCCTAGTAGAGGGACTAGTCCTACTACAACTCAGGATGGATTTGGGCTCAGTGCAC CTGGTTTTACGCCCTCTGTTCAACCTAGACCACAGGTTTCTGCTGGGCAGATGGCAGCCCCTACTTGTAAACCACTAGAAGCAGCCATCACATCCAACCA ACCTGCAACTAAGGATTTCAAATCAGTGGTTGTTTCTGGGAATGGTTTTGCTTCAGACTCGCATTTTGGCGATGTATTCTCAGCAATTCCTGCTCAAGCA AAGCAGAGTTCCTTATCAGCTGCACCTTCTACAAGCAGCATACCTGTCTCGTCAGCTATTGTTCCATCTTCTGTCGGATCCCAACATTCACTTAATTCAA GTTCCCTGGATTCTTTTCAGAGTACTTTTTCTCAGCTGCTTGTGGGTGGTCAATCAACAGCAAGACCAAACCAGCAGGTTCCACCTCAAAGTGTCACCTC TGCTCCTTCAACTGGTTTTCCTTCTGGATCTAGCAATGCAGCTCTCAGTCAATCCCAGCCTCCATGGCCGAGGATGACTCAATCTGATATTCAAAAGTAC ACAAAAGTGTTTGTGCAAGTTGACACAGATAGAGATGGGAAGCTTACTGGGGAACAGGCACGCAACCTTTTCTTAAGCTGGAGGCTACCAAGAGAGGTGT TAAAAAAAGTTTGGGATTTATCCGACCAAGATAATGACAGCATGCTTTCTTTGAGGGAGTTCTGCACTGCTCTCTATTTGATGGAGCGTTATAGAGAAAA TCGTCCTCTTCCTTCAACACTTCCAACCACTATCATGTCCGATGAGACTCTGTTGTCTGCCACAAGTCACCCTGCAACTTCATATGGCAGTGGAACTTGG GGACCTGCTTCTGGTTTGCAACAACAACAAGTTGTGACAGTTGCACGGCCATCACCTGCTGCTGCTAGGCCACCAAGGCCACCTGCTGCTCCTCATGCTG ATGAAAAACATCCCACGCAACAAAAGCCCAATGTTCTTGTGCTTGAAAAACATCTCACGAATCAACTCAACCAAGAGGAGCAGGATGCTCTCAACTCAAA GTTCCAAGAGGCATCTCAGGCCAATAAAAAGGTAGAAGAACTAGAAAAGGAAATATTAGATTCTAGACAAAAGATTGAGTTTTATCATGTCAAGATGCAG GAACTTATTTTATATAAAAGTCGATGTGACAATCGACTTAACGAGGTCACAGCAAGGGTATCTACTGATAAGCATGAGGTTGAGACATTAGGAAAGAAGT ATGAAGAGAAATACAAGCAGACTGGAGATGTTGCCTCCAAACTAACCATTGAAGAGGCTACATTTCATGATATTCAGGAGAAAAAAATGGATTTATATCG GTCAATTGTTAAAATGGAAGAAGGGGGAGCTGCTGATGGCGTGGTGAAGGAGCATGCTGAGAATATCCAATCGAGTCTTGAGGAACTAGTAAAAACTGTG AATGAACGCTGTAAACTATATGGATTGCGTTCTAAACCAATCTCACTGGTGGAACTTCCATTTGGCTGGCAACCTGGAATCCAGGAAGCTGCAGCTGATT GGGATGAAGGTTGGGACAAGTTTGACAACGAAGGATTCACATTTGTCAAAGAGCTCACCTTGGATGTACGAAATGTTGTAGCTTCTCCAAAACAAAAAAC TTCAGTTCCAAAAGAAACAACTTCCACAGATAAGGATTCAGGTGCAAAGTCAGAAAAGGTTTCAAGGCCAAGCAAATCAAATTCTGAGAAAGATTTGTTG GATCATCAACATGAGAATGGCACTCTAAAATGTCCTCCTGACAGTCCTGTCAGAAGGAGTACAACAGAGAGCCACCAATCCAGTGAATTCCGAGACTCCC CATTTAAAGAAAGTGGTGCAGAGAATTCACCCCATGCTAGAGAGATCCAAACTGATGTGGGTGGTACTGAATCTGTGCATTCTGGTGACATAATTGTTGA AACTGGCTGGGGTACATTTGATGACACACATTATGATACAGAATCAGCCTGGGGCTTCGATTCTGTCAGTGGCAAGGACATGGATTTCAGCATTGGTGAA TTTGGTTTAAATCCAATAAAAACAGGGTCCTCACATGGAGATAACATGTTCCCAGGGAAGGGCCAGTTTATGTTTGATTCTATTCCAAGCACCCTGGCTC ATAACCAGGGGAACAGCTCGTATGCTTTTGCAGATTCTGTTCCAAGCACCCCTGCATATAACCCACAGAATGCGTTTGCAGATTCTGTTCCAAGTACCCC TGCCTATAACACAGGAAAGAGTCCATTTTCATTTGCAGATTCTATCCCAAGCACCCCAGCATACAATTTCGGGAACTCTCCACGAAGGTTTAGTGAAGGT TCAGAGGACCACCCTTTTGACAGCTTCTCTAGGTTTGATTCATTTAACATGCATGATGGTGGATTATTTCAATCTCCTCGCCATTCTCTTTCAAGATTTG ATTCCATGCAGAGCACTAAGGACTCGGATCAAAGTTATGGATTCCCATCAAGGTTTGATTCCTTTAGAGAATTTGGAGACTCTAATCGAAGTCATGGGTT TTCAAGGTTTGACTCATTCAGAGAGTCTGATCAGAATCATGGGTTCTCGAGGTTTGATTCCTTCAAAGAGTCTGATCCTGGTCATGGGTTCTCATCAAGT TTCAGTTCATTTGGAGAATCTAGAGATACTGATCATAGTCATGGATTCTCAAAGATGGATTCATTTAATGCCCATGACAGTGGGTTCTTCCAAGCATCTG ACAATTCCGTAGCAAGGTTTGATTCTGTTCGTGGCTCTAAAGACTTTGATAATAGCCATGGGTTCCCATCATTTGATGATACGGATCCATTTGGCTCAAG TGGACCATTTAGGACATCACTAGAGAGCGAAACTCCGAAGGGAAGTTCTGATAACTGGCGAGCGTTTTAG
AA sequence Show only first row Show all	>Potri.007G063200.4 pacid=42765861 polypeptide=Potri.007G063200.4.p locus=Potri.007G063200 ID=Potri.007G063200.4.v4.1 annot-version=v4.1 MTNSNNTDLFDSFFRRADLDGDGQISGAEAVGFFQGSGLPKHVLAQVWMHADQRKAGYLGRQEFYNALKLVTVAQSKRELTPEIVKAALYGPASAKIPAP QVNLAATPAPKASAPAPQLAGTMSAASTNVDIRPPQVPGNAVTNQQYFPSQQGQFMRQPGPQPQAMPPISASHPQQILVSQGMPRGGTMAAPRPLNSNIS TDWLGGSAVGLTSQAPSRGTSPTTTQDGFGLSAPGFTPSVQPRPQVSAGQMAAPTCKPLEAAITSNQPATKDFKSVVVSGNGFASDSHFGDVFSAIPAQA KQSSLSAAPSTSSIPVSSAIVPSSVGSQHSLNSSSLDSFQSTFSQLLVGGQSTARPNQQVPPQSVTSAPSTGFPSGSSNAALSQSQPPWPRMTQSDIQKY TKVFVQVDTDRDGKLTGEQARNLFLSWRLPREVLKKVWDLSDQDNDSMLSLREFCTALYLMERYRENRPLPSTLPTTIMSDETLLSATSHPATSYGSGTW GPASGLQQQQVVTVARPSPAAARPPRPPAAPHADEKHPTQQKPNVLVLEKHLTNQLNQEEQDALNSKFQEASQANKKVEELEKEILDSRQKIEFYHVKMQ ELILYKSRCDNRLNEVTARVSTDKHEVETLGKKYEEKYKQTGDVASKLTIEEATFHDIQEKKMDLYRSIVKMEEGGAADGVVKEHAENIQSSLEELVKTV NERCKLYGLRSKPISLVELPFGWQPGIQEAAADWDEGWDKFDNEGFTFVKELTLDVRNVVASPKQKTSVPKETTSTDKDSGAKSEKVSRPSKSNSEKDLL DHQHENGTLKCPPDSPVRRSTTESHQSSEFRDSPFKESGAENSPHAREIQTDVGGTESVHSGDIIVETGWGTFDDTHYDTESAWGFDSVSGKDMDFSIGE FGLNPIKTGSSHGDNMFPGKGQFMFDSIPSTLAHNQGNSSYAFADSVPSTPAYNPQNAFADSVPSTPAYNTGKSPFSFADSIPSTPAYNFGNSPRRFSEG SEDHPFDSFSRFDSFNMHDGGLFQSPRHSLSRFDSMQSTKDSDQSYGFPSRFDSFREFGDSNRSHGFSRFDSFRESDQNHGFSRFDSFKESDPGHGFSSS FSSFGESRDTDHSHGFSKMDSFNAHDSGFFQASDNSVARFDSVRGSKDFDNSHGFPSFDDTDPFGSSGPFRTSLESETPKGSSDNWRAF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20760			Calcium-binding EF hand family...		Potri.007G063200 [exp]	0	1
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.002G232800 [exp]	1.00	0.8676
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.003G074200 [exp]	2.00	0.8656
AT4G01270			RING/U-box superfamily protein...		Potri.002G164000 [exp]	2.44	0.8563
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	4.47	0.8528	Pt-ABA3.1
AT5G49530			SIN-like family protein (.1)		Potri.007G028600 [exp]	6.00	0.7994
AT5G07740			actin binding (.1)		Potri.012G067900 [exp]	6.48	0.7965
AT3G49725			GTP-binding protein, HflX (.1)		Potri.007G007700 [exp]	7.41	0.8311
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.001G160700 [exp]	8.83	0.7761
AT1G58060			RNA helicase family protein (....		Potri.004G222900 [exp]	9.53	0.8072
AT1G05270			TraB family protein (.1)		Potri.007G121800 [exp]	12.00	0.8200

Compare expression of checked genes

Potri.007G063200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.