Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35870 1090 / 0 early-responsive to dehydration stress protein (ERD4) (.1) AT1G32090 59 / 1e-08 early-responsive to dehydration stress protein (ERD4) (.1) AT4G22120 59 / 2e-08 ERD (early-responsive to dehydration stress) family protein AT1G11960 58 / 3e-08 ERD (early-responsive to dehydration stress) family protein (.1) AT1G62320 56 / 9e-08 ERD (early-responsive to dehydration stress) family protein (.1) AT4G15430 55 / 2e-07 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT4G02900 53 / 6e-07 ERD (early-responsive to dehydration stress) family protein (.1) AT3G21620 52 / 1e-06 ERD (early-responsive to dehydration stress) family protein (.1) AT4G04340 46 / 9e-05 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108600 [exp] 1286 / 0 AT4G35870 1048 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.004G006000 [exp] 69 / 1e-11 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.002G113800 [exp] 59 / 1e-08 AT1G58520 827 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Potri.001G133800 [exp] 59 / 1e-08 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.003G099800 [exp] 57 / 3e-08 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.011G009900 [exp] 57 / 4e-08 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G005900 [exp] 56 / 2e-07 AT4G22120 1151 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.002G226800 [exp] 53 / 1e-06 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.011G009801 [exp] 50 / 2e-06 AT4G22120 274 / 6e-88 ERD (early-responsive to dehydration stress) family protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028409 [exp] 1136 / 0 AT4G35870 1217 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10041862 [exp] 1093 / 0 AT4G35870 1139 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10015551 [exp] 62 / 2e-09 AT4G22120 1183 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10020032 [exp] 62 / 2e-09 AT4G22120 1186 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10002133 [exp] 61 / 5e-09 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10000660 [exp] 56 / 1e-07 AT4G02900 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10028000 [exp] 56 / 2e-07 AT4G02900 1116 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10002996 [exp] 52 / 2e-06 AT4G22120 1087 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10037139 [exp] 52 / 2e-06 AT1G69450 890 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10024477 [exp] 50 / 7e-06 AT1G11960 1072 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [poplar] [flax] Anoctamin-like PF02714 [poplar] [flax] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate CL0416 [poplar] [flax] PF13967 [poplar] [flax] RSN1_TM Late exocytosis, associated with Golgi transport
Representative CDS sequence Show only first row Show all	>Potri.007G063700.1 pacid=42765117 polypeptide=Potri.007G063700.1.p locus=Potri.007G063700 ID=Potri.007G063700.1.v4.1 annot-version=v4.1 ATGTCCTCCACCCAAATCATGAACCTCTCTCTCTCTCTACCACCTTCCTCCTCTGTAGACGGCGGAGACACCGACATACCCGACCCATGGTACGGAAACA TCCAATACCTCCTAAACATCTCAACAATAGGTCTCTTCTTTTGCATATTCATCTTCCTCTTCGCCAAACTCCGCAGCGACCATCGCCGCATGCCTGTATT CTCCGCCTTAACCACCAAGCTCCTCGCCGTATGGCACGCTACCGGCCGTGAAATCGCCAGCCATTGCGGTGCTGACGCGGCTCAGTTCCTTATAATTGAA GGTGGAAGCTTTGCTGTTGTTTTTTCAATTGGGGTCTTGTCAACTGGTGTTTTGCTTCCTTTAAATGTATATGGAGGGAGTCAAGTTATAAATGATGAGT TCTCTAAGACTACTATTAATCATATCGAGAAAGGTTCAAGCTTTCTGTGGATTCATTTTGTTTTTGTTGTTTTTGTTGTGCTTTTAGTTCATTTTGGTAT GTCATTGATTGAAAAGAGGCTTAAAGTTACTAGATTTAGAGATGGGAACGGAAATTTAAGTGACCCAAATGCGAATTCTACTGCTGCTTTTACTATAATG GTTCAAGGATTGCCTAAAAGTATTGGAGATGATAGGAGGGTTTTACAAGAGTATTTTCAATATCGGTATCCCGGTAAGATTTATAAGGTTACTGTGCCTG TGGATTTGTGTGCATTTGATGATTTAGCGACGGAATTGATTAAAGTTAGGGATGAAATTACTTGGTTGGTTGTGAAAATTGATTCGAGGCTTTTGCCAGA AGAGAATGAGGGGCGTGGTGGTGGAGATGGGTTTTGGGAGAAGTTGCGACGTGTGGTGATTTGGCTGTGGAGAAATGTGAAAAGTCGGTGGGAAAAGATG ATGGATAAGTTGGGGTATATGGATGAGGAGAAGTTGAGGATATTGCTGGAATTGAGGGTGGAGTTGGAGACGAAGTTGGCAGAATATAAAGAAGGTCGCG CACCAGGTGCTGGAGTTGCATTTGTGATATTTAAGGATGTTTACACGGCTAAACAAGCAGTTCAGGATTTTTGCAATGAGAAGAAGAGGCGATTTGGAAA ATTCTTTTCTGTCATGGAGTTGAGGTTGCAGAGGAACCAATGGAAAGTTGAACGAGCTCCATTGGCGCCAGATATTTACTGGAACCATTTGGGGTCGTCA AAGTTGTCTATGAGGTTGAGGAGATTGTTTGTGAACACGTGCTTGCTGTTAATGCTTGTATTCTTCAGTTCTCCTCTTGCTGTGATAAGTGCTTTGAACA GCGCTGGTCGAATTATTGACGCAGAAGCAATGAATAATGCGCAATCATGGTTGGATTGGGTACAGAGTTCCAGCTGGTTAGCATCCCTAATCTTCCAGTT CCTGCCGAATGTTATTATATTTGTCAGCATGTATATAATAATTCCATCAGCTCTTTCTTATCTGTCCAAGTTTGAACGTCATCTAACAGTGTCCGAGGAA CAAAGAGCTGCACTTCTGAAGATGGTTTGTTTTTTCCTTGTAAACCTTATTCTATTGAGAGGTCTTGTTGAGTCTTCTTTGGAAAGTGCAATCCTAAATA TGGGTAGGTGTTATTTGGATGGAGAAGATTGCAAGAGGATTGAGCAATACATGAGTGCATCATTTCTGTCAAGATCTTGTTTCTCTTCACTTGCATTTCT AATCACAAGTACTTTCTTGGGGATATCTTATGATCTTTTGGCTCCCATCCCTTGGATAAAGAAGAAAATTCAGAAGTTTCAAAAGAATGACATGCTCCAG CTGGTGCCTGAGCAAAGTGAAGAGTACCCTTTGGAAGGTCAAGCCATAGATGCTCTTCAGAGACCACTGATCCCTGATAACGTGTTTGATTCTCCCAGGT CGAATCAAATTGATGAAGAGGGACAAGATCTCTCCACTTATCCAATCAGCGGAACCTCTCCCATCCCCAAGCAGACATTTGATTTTGCTCAATATTACGC ATTTAATTTGACAATATTTGCGCTGACCTTGATATATTCATCATTTGCTCCACTTGTTGTCCCTGTCGGTGCAGTTTATTTTGGGTATAGGTATGTGGTT GACAAGTACAACTTTCTGTTTGTATATAGAGTCAGGGGGTTTCCTGCTGGAAATGATGGGAGATTGATGGATACTGTATTGTGTATCATGCGGTTCTGTG TTGATCTATTCCTCCTTTCAATGCTTCTGTTCTTCTCAGTTCAGGGTGATTCCATGAAGTTGCAAGCCATTTTCACACTTGGATTATTAGTATTGTATAA ATTATTGCCTTCCGATAATGATAGTTTTCAACCAGCTCTTTTGGAACGTATACAAAACGTTGACAGCATTGTAGAGGGACCCATTGATTATGAGGTATTC TCACAACCCAGATTTGACTGGGATACATATCATTCATAG
AA sequence Show only first row Show all	>Potri.007G063700.1 pacid=42765117 polypeptide=Potri.007G063700.1.p locus=Potri.007G063700 ID=Potri.007G063700.1.v4.1 annot-version=v4.1 MSSTQIMNLSLSLPPSSSVDGGDTDIPDPWYGNIQYLLNISTIGLFFCIFIFLFAKLRSDHRRMPVFSALTTKLLAVWHATGREIASHCGADAAQFLIIE GGSFAVVFSIGVLSTGVLLPLNVYGGSQVINDEFSKTTINHIEKGSSFLWIHFVFVVFVVLLVHFGMSLIEKRLKVTRFRDGNGNLSDPNANSTAAFTIM VQGLPKSIGDDRRVLQEYFQYRYPGKIYKVTVPVDLCAFDDLATELIKVRDEITWLVVKIDSRLLPEENEGRGGGDGFWEKLRRVVIWLWRNVKSRWEKM MDKLGYMDEEKLRILLELRVELETKLAEYKEGRAPGAGVAFVIFKDVYTAKQAVQDFCNEKKRRFGKFFSVMELRLQRNQWKVERAPLAPDIYWNHLGSS KLSMRLRRLFVNTCLLLMLVFFSSPLAVISALNSAGRIIDAEAMNNAQSWLDWVQSSSWLASLIFQFLPNVIIFVSMYIIIPSALSYLSKFERHLTVSEE QRAALLKMVCFFLVNLILLRGLVESSLESAILNMGRCYLDGEDCKRIEQYMSASFLSRSCFSSLAFLITSTFLGISYDLLAPIPWIKKKIQKFQKNDMLQ LVPEQSEEYPLEGQAIDALQRPLIPDNVFDSPRSNQIDEEGQDLSTYPISGTSPIPKQTFDFAQYYAFNLTIFALTLIYSSFAPLVVPVGAVYFGYRYVV DKYNFLFVYRVRGFPAGNDGRLMDTVLCIMRFCVDLFLLSMLLFFSVQGDSMKLQAIFTLGLLVLYKLLPSDNDSFQPALLERIQNVDSIVEGPIDYEVF SQPRFDWDTYHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35870			early-responsive to dehydratio...		Potri.007G063700 [exp]	0	1
AT2G18670			RING/U-box superfamily protein...		Potri.018G098100 [exp]	3.16	0.7520
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.001G262900 [exp]	5.65	0.6912
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.005G254000 [exp]	12.48	0.6773
AT5G19630			alpha/beta-Hydrolases superfam...		Potri.006G191700 [exp]	12.96	0.7249
AT3G51980			ARM repeat superfamily protein...		Potri.003G158701 [exp]	16.09	0.6913
AT3G43610			Spc97 / Spc98 family of spindl...		Potri.009G153300 [exp]	23.62	0.7005
AT3G05320			O-fucosyltransferase family pr...		Potri.015G117500 [exp]	34.64	0.5893
AT5G07900			Mitochondrial transcription te...		Potri.001G035300 [exp]	37.94	0.6784
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Potri.004G168400 [exp]	42.44	0.6716
					Potri.008G119000 [exp]	53.06	0.6722

Compare expression of checked genes

Potri.007G063700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.