Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35880 698 / 0 Eukaryotic aspartyl protease family protein (.1) AT2G17760 481 / 1e-166 Eukaryotic aspartyl protease family protein (.1) AT3G51330 384 / 4e-128 Eukaryotic aspartyl protease family protein (.1) AT3G51360 377 / 3e-126 Eukaryotic aspartyl protease family protein (.1) AT3G51350 356 / 2e-117 Eukaryotic aspartyl protease family protein (.1) AT3G51340 337 / 6e-110 Eukaryotic aspartyl protease family protein (.1) AT5G10080 296 / 3e-94 Eukaryotic aspartyl protease family protein (.1) AT3G02740 137 / 7e-35 Eukaryotic aspartyl protease family protein (.1) AT1G65240 132 / 2e-33 Eukaryotic aspartyl protease family protein (.1) AT5G36260 123 / 3e-30 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108700 [exp] 443 / 1e-151 AT2G17760 515 / 1e-179 Eukaryotic aspartyl protease family protein (.1) Potri.005G079900 [exp] 340 / 3e-111 AT5G10080 538 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G092100 [exp] 287 / 1e-90 AT5G10080 474 / 3e-163 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 132 / 3e-33 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 130 / 2e-32 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 120 / 6e-29 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.014G146400 [exp] 118 / 2e-28 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 117 / 6e-28 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 115 / 2e-27 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028410 [exp] 710 / 0 AT4G35880 672 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041864 [exp] 677 / 0 AT4G35880 646 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10028411 [exp] 465 / 4e-160 AT2G17760 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041865 [exp] 431 / 7e-147 AT2G17760 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10019678 [exp] 308 / 2e-98 AT5G10080 567 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10016434 [exp] 278 / 6e-88 AT5G10080 515 / 1e-180 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 131 / 1e-32 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021397 [exp] 127 / 2e-31 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042982 [exp] 127 / 3e-31 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10027001 [exp] 118 / 2e-28 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.007G063800.2 pacid=42765039 polypeptide=Potri.007G063800.2.p locus=Potri.007G063800 ID=Potri.007G063800.2.v4.1 annot-version=v4.1 ATGAGATCTTCATCGAAACTAACCTTCTTCTTTTTGTTGATAACAATCTGGGTTTTCTCTAAAACCTGTAAAGGCCGCGTCTTTACTTTCAAGATGCACC ACAGATTCTCTGATTCATTCAAGAATTGGTCAGGTTTGACCAGAAACTGGCCCGAGAAAGGAAGCTTTGAGTACTATGCAGCATTGGCTCATCGTGATCA GATGTTAAGGGGGCGTAGACTCTCTGATGCTGATGCATCTTTAGCTTTTTCTGATGGGAATTCAACCTTTAGAATCAGCTCCTTGGGATTCTTGCATTAC ACAACAGTGGAATTGGGGACACCAGGAGTGAAGTTTATGGTGGCACTTGACACAGGAAGTGATTTGTTCTGGGTGCCTTGTGATTGCAGCAGATGTGCAC CTACTCATGGAGCTAGTTATGCCTCTCAGGATTTTGAGCTTAGTATATACAACCCAAGAGAGTCATCGACAAGCAAAAAGGTCACCTGCAACAATGATAT GTGTGCACAGCGTAATCGCTGCCTTGGAACATTCAGCAGCTGCCCTTACATAGTCTCTTATGTCTCTGCTCAAACGTCTACTTCTGGGATTTTGGTAAAG GATGTTCTGCACTTGACAACAGAAGATGGTGGACGAGAATTTGTTGAAGCGTATGTCACATTTGGTTGTGGCCAGGTTCAAAGTGGTTCATTTCTAGACA TTGCTGCTCCCAATGGTTTATTTGGGCTGGGGATGGAGAAGATTTCTGTTCCTAGTGTCTTATCTAGGGAGGGATTAATAGCAGATTCTTTCTCCATGTG CTTTGGACATGATGGAATTGGAAGAATCAGTTTCGGGGACAAGGGTAGTCCTGACCAGGAAGAGACCCCATTTAATGTTAACCCAGCACACCCAACCTAT AATGTTACTGTGACTCAAGCTCGAGTAGGAACCATGTTAATCGATGTAGAGTTCACAGCTCTTTTTGATTCTGGGACTTCTTTTACATACATGGTCGACC CAGCCTATTCAAGGGTCTCGGAGAAATTTCATTCACTGGCACGAGATAAGAGGCGTCCACCTGATCCCAGGATTCCTTTTGAATATTGTTATGATATGAG TCCTGATGCAAATGCAAGTTTGGTACCCAGTATGAGTTTAACAATGAAAGGAGGAAGGCATTTTACTGTCTATGATCCAATAATTGTGATCTCCACTCAG AACGAAATTGTATATTGCTTGGCCGTTGTCAAGAGCACAGAACTCAATATAATCGGGCAAAACTTCATGACTGGTTACCGTGTTGTATTTGATAGAGAAA AACTTGTCTTGGGATGGAAGAAGTTTGATTGCTATGATGTGGAGGATTATAACAATTTCCCACTGCAACCACATGCTTCCATGGTGCCTCCTGCAGTTGC TGCTGGACTAGGCAGCAACTCTAGCACAGGCTCAGAAAAAGAGGCCAGTAATAAATCTCCAAGTTCAATTGCATCTACATATTGCTATAGCCATACTTCT GTTTTCACTAGCTTGATATCAGTCTTCCTTATATGTCTCTTATTATAA
AA sequence Show only first row Show all	>Potri.007G063800.2 pacid=42765039 polypeptide=Potri.007G063800.2.p locus=Potri.007G063800 ID=Potri.007G063800.2.v4.1 annot-version=v4.1 MRSSSKLTFFFLLITIWVFSKTCKGRVFTFKMHHRFSDSFKNWSGLTRNWPEKGSFEYYAALAHRDQMLRGRRLSDADASLAFSDGNSTFRISSLGFLHY TTVELGTPGVKFMVALDTGSDLFWVPCDCSRCAPTHGASYASQDFELSIYNPRESSTSKKVTCNNDMCAQRNRCLGTFSSCPYIVSYVSAQTSTSGILVK DVLHLTTEDGGREFVEAYVTFGCGQVQSGSFLDIAAPNGLFGLGMEKISVPSVLSREGLIADSFSMCFGHDGIGRISFGDKGSPDQEETPFNVNPAHPTY NVTVTQARVGTMLIDVEFTALFDSGTSFTYMVDPAYSRVSEKFHSLARDKRRPPDPRIPFEYCYDMSPDANASLVPSMSLTMKGGRHFTVYDPIIVISTQ NEIVYCLAVVKSTELNIIGQNFMTGYRVVFDREKLVLGWKKFDCYDVEDYNNFPLQPHASMVPPAVAAGLGSNSSTGSEKEASNKSPSSIASTYCYSHTS VFTSLISVFLICLLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35880			Eukaryotic aspartyl protease f...		Potri.007G063800 [exp]	0	1
AT4G27435			Protein of unknown function (D...		Potri.001G403600 [exp]	4.00	0.9463
AT1G12000			Phosphofructokinase family pro...		Potri.011G015600 [exp]	5.38	0.9479
AT3G12955			SAUR-like auxin-responsive pro...		Potri.001G458000 [exp]	6.24	0.9462	SAUR4
AT2G01070			Lung seven transmembrane recep...		Potri.001G209400 [exp]	6.92	0.9451
AT2G32980			unknown protein		Potri.014G158000 [exp]	7.74	0.9430
AT3G54120			Reticulon family protein (.1)		Potri.016G110200 [exp]	9.38	0.9424
AT5G64180			unknown protein		Potri.015G005600 [exp]	9.79	0.9403
AT5G03300		ADK2	adenosine kinase 2 (.1)		Potri.010G224300 [exp]	10.39	0.9414	ADK2.2
AT5G18580		FASS2, TON2, GD...	GORDO, FASS 1, EMBRYO DEFECTIV...		Potri.010G022300 [exp]	11.31	0.9370
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.011G079400 [exp]	11.61	0.9438

Compare expression of checked genes

Potri.007G063800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.