Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35260 595 / 0 IDH-I, IDH1 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) AT4G35650 575 / 0 IDH-III isocitrate dehydrogenase III (.1) AT2G17130 573 / 0 IDH-II, IDH2 isocitrate dehydrogenase II, isocitrate dehydrogenase subunit 2 (.1.2) AT5G03290 303 / 4e-101 IDH-V isocitrate dehydrogenase V (.1) AT3G09810 291 / 3e-96 IDH-VI isocitrate dehydrogenase VI (.1) AT1G32480 285 / 5e-96 IDH-IV isocitrate dehydrogenase IV (.1) AT1G80560 103 / 2e-24 ATIMD2 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) AT5G14200 98 / 1e-22 ATIMD1 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, isopropylmalate dehydrogenase 1 (.1.2.3) AT1G31180 94 / 4e-21 IPMDH1, ATIMD3 ISOPROPYLMALATE DEHYDROGENASE 1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 3, isopropylmalate dehydrogenase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G099600 [exp] 630 / 0 AT4G35260 613 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.004G204300 [exp] 597 / 0 AT4G35260 611 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.009G165200 [exp] 589 / 0 AT4G35260 621 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.016G091200 [exp] 306 / 2e-102 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Potri.006G126700 [exp] 306 / 3e-102 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1) Potri.001G185600 [exp] 102 / 3e-24 AT1G80560 639 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028374 [exp] 610 / 0 AT4G35260 659 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10041824 [exp] 608 / 0 AT4G35260 656 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10014436 [exp] 561 / 0 AT4G35260 620 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10023937 [exp] 501 / 6e-180 AT4G35260 549 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10002221 [exp] 301 / 2e-100 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1) Lus10013806 [exp] 301 / 2e-100 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10023192 [exp] 299 / 2e-99 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1) Lus10026519 [exp] 297 / 1e-98 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10030344 [exp] 100 / 6e-23 AT1G80560 655 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Lus10041077 [exp] 88 / 6e-19 AT1G80560 658 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [poplar] [flax] Iso_DH PF00180 [poplar] [flax] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.007G064000.1 pacid=42765635 polypeptide=Potri.007G064000.1.p locus=Potri.007G064000 ID=Potri.007G064000.1.v4.1 annot-version=v4.1 ATGGCTAGGCGCTCCATACCCGTCCTAAAACACCTGCTAACCTCCTCCTCCACCCCCACCCTCCGCCGATCCGTAACCTACATGCCACGCCCCGGCGACG GCGCACCGCGACCCGTAACCTTGATCCCCGGCGACGGAATCGGCCCTCTAGTGACCAACGCCGTCGAACAGGTCATGGAAGCAATGCACGCACCAGTGTA TTTCGAGAAATACGACATCCATGGGGACATGATGAGAGTACCGTCAGAAGTGATAGAATCGATAAAGAAAAACAAAGTATGCTTGAAAGGAGGGTTGGCG ACGCCTATGGGAGGAGGAGTTAGTTCATTGAATGTGCAATTGAGGAAGGAGTTGGATTTGTATGCGTCGCTTGTGAATTGTTTTAATCTGCAAGGATTGC CTACGCGACATGAGAATGTTGATATTGTTGTTATTAGGGAGAATACGGAGGGAGAGTATGCGGGTTTGGAGCATGAAGTGGTTCCTGGTGTTGTTGAGAG TCTTAAGGTGATAACAAAGTTCTGTTCAGAACGCATTGCAAAATATGCTTTTGAGTATGCTTACCTGAATAACCGGAAGAAAGTGACTGCTGTGCACAAA GCAAACATTATGAAGCTTGCAGATGGTTTGTTCCTGGAATCTTGTAGGGAGGTTGCTACAAAATATCCTGGGATCAAATACAATGAAATTATTGTGGACA ATTGCTGCATGCAACTTGTCTCAAAGCCTGAGCAATTTGATGTCATGGTGACACCTAATCTTTATGGCAATCTCGTTGCAAATACCGCTGCAGGTATTGC TGGTGGCACTGGAGTCATGCCAGGAGGCAACGTCGGGGCTGATCATGCTATTTTTGAGCAAGGTGCTTCAGCAGGAAATGTAGGTAATGATAAACTATTG GAACAGAAGACAGCAAACCCAGTGGCACTGCTTCTCTCTTCTGCCATGATGCTAAGACATCTCCAGTTCCCTTCTTTCGCTGATCGATTAGAAACTGCAG TCAAACGGGTAATTTCAGAGAGTCATTACCGGACAAAAGATCTAGGCGGAACCAGCACTACTCAAGAGGTTGTTGATGCAGTCATAGGTGCTTTAGACTG A
AA sequence Show only first row Show all	>Potri.007G064000.1 pacid=42765635 polypeptide=Potri.007G064000.1.p locus=Potri.007G064000 ID=Potri.007G064000.1.v4.1 annot-version=v4.1 MARRSIPVLKHLLTSSSTPTLRRSVTYMPRPGDGAPRPVTLIPGDGIGPLVTNAVEQVMEAMHAPVYFEKYDIHGDMMRVPSEVIESIKKNKVCLKGGLA TPMGGGVSSLNVQLRKELDLYASLVNCFNLQGLPTRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHK ANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAIFEQGASAGNVGNDKLL EQKTANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISESHYRTKDLGGTSTTQEVVDAVIGALD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Potri.007G064000 [exp]	0	1
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Potri.005G099600 [exp]	40.81	0.7746
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Potri.003G144000 [exp]	41.80	0.7655
AT2G30150			UDP-Glycosyltransferase superf...		Potri.001G281800 [exp]	143.49	0.7486
AT2G34630		GPPS, GPS1	GERANYLPYROPHOSPHATE SYNTHASE,...		Potri.006G135300 [exp]	162.92	0.7484

Compare expression of checked genes

Potri.007G064000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.