Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20823 119 / 8e-34 RING/U-box superfamily protein (.1) AT1G76410 115 / 2e-32 ATL8 RING/U-box superfamily protein (.1) AT2G17450 113 / 8e-32 RHA3A RING-H2 finger A3A (.1) AT4G35480 109 / 6e-30 RHA3B RING-H2 finger A3B (.1) AT5G05280 96 / 4e-25 RING/U-box superfamily protein (.1) AT5G01880 85 / 4e-21 RING/U-box superfamily protein (.1) AT3G10910 82 / 1e-19 RING/U-box superfamily protein (.1) AT4G17905 83 / 5e-19 ATL4H RING/U-box superfamily protein (.1) AT3G18773 81 / 7e-19 RING/U-box superfamily protein (.1) AT1G49220 79 / 4e-18 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G099000 [exp] 166 / 4e-52 AT1G20823 146 / 2e-44 RING/U-box superfamily protein (.1) Potri.002G006400 [exp] 114 / 4e-32 AT1G76410 177 / 1e-56 RING/U-box superfamily protein (.1) Potri.005G255200 [exp] 113 / 1e-31 AT1G76410 163 / 2e-51 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 89 / 4e-22 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 89 / 5e-22 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 86 / 3e-21 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.001G309600 [exp] 87 / 5e-21 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 85 / 3e-20 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.003G075200 [exp] 83 / 3e-20 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030728 [exp] 122 / 5e-35 AT1G20823 209 / 6e-69 RING/U-box superfamily protein (.1) Lus10013210 [exp] 117 / 4e-33 AT1G20823 207 / 3e-68 RING/U-box superfamily protein (.1) Lus10025162 [exp] 110 / 1e-30 AT1G20823 190 / 6e-62 RING/U-box superfamily protein (.1) Lus10016040 [exp] 110 / 2e-30 AT1G20823 202 / 4e-66 RING/U-box superfamily protein (.1) Lus10033515 [exp] 87 / 4e-21 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10029037 [exp] 86 / 4e-21 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1) Lus10022743 [exp] 85 / 1e-20 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10025146 [exp] 84 / 2e-20 AT3G10910 128 / 8e-38 RING/U-box superfamily protein (.1) Lus10006788 [exp] 84 / 7e-20 AT1G49230 214 / 2e-70 RING/U-box superfamily protein (.1) Lus10020859 [exp] 84 / 1e-19 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.007G064401.1 pacid=42765484 polypeptide=Potri.007G064401.1.p locus=Potri.007G064401 ID=Potri.007G064401.1.v4.1 annot-version=v4.1 ATGCCTCGCTTTTCAAGAATCCTCTACGCCTCCGCGGATGCGGCAGCGCCCCCAGCGGCTGTTAGCGTTCAGTCTGACCTTATGGTTATATTAGCAGCTC TTCTGTGTGCATTACTATGCGTGGTGGGGCTTATTTTGATGGCTCGTTGTGCCTGCACCCGCCGTGTTACTGGTGGGTCACCGTCATCGGACAAAGCTAA CAAGGGTGTGAAGAAGAAGAACCTCCAGCTGCTGCCCAGGTTCAGTTACTCTGCTGGAGATGGTAGCGGAGAGGGTGGTGGCGCCACCACCAAGTTTGGA TCAACAGAGTGCGCAATTTGCTTGGGTGAGTTTGTTGAAGGAGATGAAGTTAGGGTTTTGCCTCAGTGTGGACATAGCTTCCATGTTGTCTGCATTGACA CATGGCTTAGGTCTCATTCCTCTTGTCCCTCTTGCCGTCAGATTTTGGTGGTGGCTAGGTGTCAGAAATGTAGTCATTTTCCTGCTTCCACCTCCTCCGC CTCCTGTGGTGGTGGACCTGCCACTGGAGAAGATTGCAATGTCAAAAACAGTGATACCAATCATGCCCAAGAAATGTAG
AA sequence Show only first row Show all	>Potri.007G064401.1 pacid=42765484 polypeptide=Potri.007G064401.1.p locus=Potri.007G064401 ID=Potri.007G064401.1.v4.1 annot-version=v4.1 MPRFSRILYASADAAAPPAAVSVQSDLMVILAALLCALLCVVGLILMARCACTRRVTGGSPSSDKANKGVKKKNLQLLPRFSYSAGDGSGEGGGATTKFG STECAICLGEFVEGDEVRVLPQCGHSFHVVCIDTWLRSHSSCPSCRQILVVARCQKCSHFPASTSSASCGGGPATGEDCNVKNSDTNHAQEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20823			RING/U-box superfamily protein...		Potri.007G064401 [exp]	0	1
AT4G38020			tRNA/rRNA methyltransferase (S...		Potri.005G147600 [exp]	5.74	0.7720
AT2G02570			nucleic acid binding;RNA bindi...		Potri.004G229200 [exp]	7.74	0.7549
AT4G13720			Inosine triphosphate pyrophosp...		Potri.003G175800 [exp]	8.48	0.7375
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Potri.017G119500 [exp]	10.39	0.6899
AT4G16160		ATOEP16-2, ATOE...	Mitochondrial import inner mem...		Potri.008G107200 [exp]	13.11	0.6764
AT5G40500			unknown protein		Potri.001G344700 [exp]	13.78	0.6819
AT5G06210			RNA binding (RRM/RBD/RNP motif...		Potri.006G208500 [exp]	14.69	0.6990
AT3G53140			O-methyltransferase family pro...		Potri.006G120000 [exp]	18.02	0.7085	COMTL4
AT3G49645			unknown protein		Potri.017G091300 [exp]	24.49	0.6585
AT5G40100			Disease resistance protein (TI...		Potri.006G283100 [exp]	26.92	0.6889

Compare expression of checked genes

Potri.007G064401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.