Plant FIBer expression Database

Potri.007G065250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G227900
[exp]
41 / 8e-05 AT2G18350 171 / 4e-52 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G065250.1 pacid=42765796 polypeptide=Potri.007G065250.1.p locus=Potri.007G065250 ID=Potri.007G065250.1.v4.1 annot-version=v4.1
ATGTGGAACAACCAAATCCCTACACGTCATCAATCATCAGAGCTAGAAGGAAGAAAGGGGAACCCAACGCCAACCATCAAGATCTCCATACCCAGATCGA
CTTGGAATCATCTCAAGCAAACCCAACTCCACAACTCCAAAACGCCGGGTCTCATCCGGGTTCGTCCGGGTCGTCCGGGTCATGGGTCGAACCGCCGGGT
CGACCGGGTTTTGCCGGGTTATTGCACTGGCCGGTCTTTGGACAAACCTGAACCGATCCAGCCACCGGGTCGGCCGGTTCCCGGGTCGACCCGCCGGGCC
GGTCCGGGTTTAATAACTATGCTTGTGATTGTGTTTATATCGGGCCTAGTCCCATTTCTTTTATTAATTTTTTTTAATTTTATTCTTAACAATAAATAA
AA sequence
>Potri.007G065250.1 pacid=42765796 polypeptide=Potri.007G065250.1.p locus=Potri.007G065250 ID=Potri.007G065250.1.v4.1 annot-version=v4.1
MWNNQIPTRHQSSELEGRKGNPTPTIKISIPRSTWNHLKQTQLHNSKTPGLIRVRPGRPGHGSNRRVDRVLPGYCTGRSLDKPEPIQPPGRPVPGSTRRA
GPGLITMLVIVFISGLVPFLLLIFFNFILNNK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.007G065250
[exp]
0 1
AT1G47480 alpha/beta-Hydrolases superfam... Potri.009G104700
[exp]
3.00 0.8197
AT2G36430 Plant protein of unknown funct... Potri.007G013800
[exp]
6.00 0.7930
AT1G60710 ATB2 NAD(P)-linked oxidoreductase s... Potri.013G040000
[exp]
8.00 0.8101
AT3G16520 UGT88A1 UDP-glucosyl transferase 88A1 ... Potri.017G150100
[exp]
10.09 0.8120
AT4G10265 Wound-responsive family protei... Potri.013G148300
[exp]
10.48 0.7972
AT3G01860 unknown protein Potri.001G332500
[exp]
14.49 0.7892
AT5G44950 F-box/RNI-like/FBD-like domain... Potri.012G099400
[exp]
18.76 0.7806
AT1G08970 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9"... Potri.008G203500
[exp]
19.07 0.7840
AT2G31130 unknown protein Potri.004G055300
[exp]
24.53 0.7966
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Potri.013G104100
[exp]
27.71 0.7971

Potri.007G065250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.