Plant FIBer expression Database

Potri.007G065300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16650 547 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013723
[exp]
616 / 0 AT1G16650 606 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10005589
[exp]
154 / 1e-41 AT1G16650 143 / 3e-38 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF13679 Methyltransf_32 Methyltransferase domain
Representative CDS sequence
>Potri.007G065300.3 pacid=42766208 polypeptide=Potri.007G065300.3.p locus=Potri.007G065300 ID=Potri.007G065300.3.v4.1 annot-version=v4.1
ATGATCCGCACAAAACGGCACATCGCATACCTTGTCCACTCTATTAAACAACACGTCGTCCATATATCCTGTAACTTAAGAACTCAGCATTCAAAAGTTC
GTAAAAAAAAAAACAAAAAAAAAATGGAGGACTGCAACCAAAAGTACAGTTGCAGAACAGCAAAAGAAACCCTAGAATGGATAAACGCAATCCTCAATTT
CATTAAACCCTACGCTTTCTTAACCAACGCACATGTTACCAATTTCTTCACCCACAAGTTATGGCAATCCATTGATCCTGTCTGGCTCCATTGCTTGCGT
AACGAACCTGTCCAAAATCTCCTCCTAATTCCTTGTGGTATAATCCAGGAGCATTGGCCTGCTTCGCTGAAGGAATTTGTTTTAGATTTGAAGTCTCTCG
CGTTTCCTCGCGAGCAAGCGCATTTAAACAAGCTATTCCCGGGAGTGAATGTGGTTTCGCTTAATACTGTACTTGCACAAGGCATGAATTTCAAGAAAAA
ACATGAAGTGGAAGTTCTTTCTGCGGTTGTTAGTTCTGTTGCGAATAGTGTGGGAGCTCAAACAATAGTTGATGTTGGTGCTGGCCAGGGTTATCTTGCC
CAAGTTCTTTCCTTCCAGTACCAGCATTCTGTAGTTGCTATCGATGCCTGTTCTCATCATGGAACTGTCACGGAGAAACGTGCAGAACGGATCAAGAAGC
ATTATGCAGCTCAAATGCGAAAACATTATCCAGGAATTGGGATTCCAAATGTGCCGAAGACAATTACATGCCATGTCATGTCCATTGACATGTTGAAAGC
ATTGACTAGCATGTCACCACATATTGATAATGTTAAGCGGCCAGAATTGATTGGGCAAGTTGCAGATGATAAGACTTCATTGGTACTTGCTGGGTTACAT
GCATGTGGCGATCTTTCAGTAACTATGCTGAAGACCTTTTTAGAGTGCAAAGATGTTAAAGCAGTTGTTAGCATTGGATGCTGTTATAACCTGCTTTCTG
AAGGATGTCTTGACATAGCTGGTTCACAATGTGGTTTTCCTGTGAGTTGTGGTGTTAAATCTGCTGGTATATCACTTGGGAAAAGTTCACGTGATCTTGC
TTGTCAGAGTGCAGAGAGATGGAGGAGTCTCGAACAAGATGCAGGTCTTCATAATTTTGAGTTGCATGCTTTCCGTGCTGCTTTTCAGATGGTTCTTTGT
AAATATTATCCTGAAATCATAAAATCAAGTCCCTCAATTGGCCGTCAAGGGAAGGCGCTGCGACGCCAACAGCAAAGGAGGATCCTGCAGTCTTCAATTA
ATTGTGATGAAAGTAAACATTCATCAATGCCTGAGACAATTTCTCATATGCAAGAACTCTACCTAAATCCACACATGTCAGAATCTAAAACAGATGACTA
TTCAGGCTCAGCACTGCATTCTCATGAATTATCCTGCAATGGAGGTGCCAGATACAATGAAACTGCAGCTGCAAGCAAATATTTGCTATTCGAGAAATTT
ACTCAGTCTGGATTATCTCGCCTAGGTCTCAAATCTTTGCAGGAGACACATTTCCATGAAATATGGAAGGAAGCTGAGCCATTTGCTGGGCTTATAGGAC
CATATTGGTCGCTGCGAGCTGCTTTAGGACCTCTTTTGGAAACTCTTCTTCTGCTTGATAGATTATTGTTCCTCCAAGAGCAAGGCAGTTCTCTGGAAGC
AATCATGTTACCTATCTTTGATCCTGCATTATCCCCAAGGAATGTGGCCATAATTGCCAAAAGAATTTGA
AA sequence
>Potri.007G065300.3 pacid=42766208 polypeptide=Potri.007G065300.3.p locus=Potri.007G065300 ID=Potri.007G065300.3.v4.1 annot-version=v4.1
MIRTKRHIAYLVHSIKQHVVHISCNLRTQHSKVRKKKNKKKMEDCNQKYSCRTAKETLEWINAILNFIKPYAFLTNAHVTNFFTHKLWQSIDPVWLHCLR
NEPVQNLLLIPCGIIQEHWPASLKEFVLDLKSLAFPREQAHLNKLFPGVNVVSLNTVLAQGMNFKKKHEVEVLSAVVSSVANSVGAQTIVDVGAGQGYLA
QVLSFQYQHSVVAIDACSHHGTVTEKRAERIKKHYAAQMRKHYPGIGIPNVPKTITCHVMSIDMLKALTSMSPHIDNVKRPELIGQVADDKTSLVLAGLH
ACGDLSVTMLKTFLECKDVKAVVSIGCCYNLLSEGCLDIAGSQCGFPVSCGVKSAGISLGKSSRDLACQSAERWRSLEQDAGLHNFELHAFRAAFQMVLC
KYYPEIIKSSPSIGRQGKALRRQQQRRILQSSINCDESKHSSMPETISHMQELYLNPHMSESKTDDYSGSALHSHELSCNGGARYNETAAASKYLLFEKF
TQSGLSRLGLKSLQETHFHEIWKEAEPFAGLIGPYWSLRAALGPLLETLLLLDRLLFLQEQGSSLEAIMLPIFDPALSPRNVAIIAKRI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G16650 S-adenosyl-L-methionine-depend... Potri.007G065300
[exp]
0 1
AT2G25910 3'-5' exonuclease domain-conta... Potri.018G058900
[exp]
2.82 0.8020
AT3G20475 ATMSH5 MUTS-homologue 5 (.1) Potri.011G089500
[exp]
3.46 0.8487
AT3G48900 single-stranded DNA endonuclea... Potri.015G142800
[exp]
7.07 0.7444
AT1G51130 Nse4, component of Smc5/6 DNA ... Potri.016G046802
[exp]
7.34 0.8134
AT3G09320 DHHC-type zinc finger family p... Potri.016G100200
[exp]
7.93 0.8049
AT2G42900 Plant basic secretory protein ... Potri.005G202300
[exp]
8.12 0.7480
AT4G35740 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, D... Potri.005G107400
[exp]
9.53 0.7847
AT4G26310 elongation factor P (EF-P) fam... Potri.001G004300
[exp]
9.79 0.7898
AT5G03415 E2F_DP ATDPB, DPB Transcription factor DP (.1.2) Potri.016G093200
[exp]
12.12 0.7111
AT3G59360 UTR6, ATUTR6 UDP-galactose transporter 6 (.... Potri.010G180500
[exp]
15.87 0.7845

Potri.007G065300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.