Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08420 416 / 1e-144 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042479 [exp] 451 / 7e-159 AT5G08420 449 / 7e-158 RNA-binding KH domain-containing protein (.1) Lus10026187 [exp] 451 / 1e-158 AT5G08420 437 / 5e-153 RNA-binding KH domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G065500.1 pacid=42765804 polypeptide=Potri.007G065500.1.p locus=Potri.007G065500 ID=Potri.007G065500.1.v4.1 annot-version=v4.1 ATGGAGGCAGACGGAGCAGAAAACACAGATATATCAAACACAAAGAAACCAAAACACAAAGGAAAACATGATAAGCCAAAACCATGGGATGAAGACCCTA ATATTGACCGTTGGAAGATTGAAAAATTTGACCCGTCTTGGAATCAAGGTGGAATGGTCGATGTCAGCTCTTTCTCCACTCTTTTCCCTAAATATCGCGA GAAGTACTTGACGGACGCATGGCCGATGGTGAAATCTGCGTTAAAAGAGTTTGGCATTGATTGCGAACTTAATAAGAATGAGGGGTCAATGACGGTTAAA ACTACGATAAAGACCAGGGATCCTTATATTATTGTTAAAGCTAGGGATCTTATTAAGCTTTTGTCGAGAAGTGTCCCTGCTCCTCAGGCTATCAAAATTT TGAATGACGATATGAGTTGTGACATCATCAAGATCGGCAACATGATTCGTAATAAGGAACGATTTGTTAAAAGAAGACAAAACCTTGTGGGCCCGAATTC ATCAACCTTGAAGGCACTAGAATTATTGACAGGCTGCTATATTCTAGTTCAGGGAAACACTGTTGCTGCTATGGGCTCATTTAAAGGTTTAAAACAAGTC AGGAGAATTGTTGAAGACTGCATACAAAATAAAATGCATCCCGTATACCATATAAAGATTCTTATGATGAAGAAAGAACTCGAAAAAGATCCTGCTCTTA AAAATGAGAACTGGGACAGGTTCCTTCCTAAATATAAGAAGAAGACCGTGAAACAAAAGAAGGTTAAGAGTAAAAAGAAGAAACAAGACACACCATTCCC TCCTCCTCAACAACCTAGCATGGAAGATATACAACTGGAGACAGGAGAATACTTTTTAAGTGACAAGAAGAAACAAGCAAAGAAGTGGCATGAAAAACAA GAGAAGCAATTAGAAAAAACAGCTGAAAACAAAAGAAAAAGAGATGCCGCCTTTGTTCCTCCCAAGGAACTCGTAAAGGAGGATCCTAGCACATATGCAG ATAATAACAAAGATGTGGCTGCCATGGCCATGTCACTAAAGAAAAAGGCAAAGGAGTTTGGGAAGCAGAAGTCTTTTGAGAATGTCAATCCAGAAGATTA TATTGCCACATCTGGAGAACAACCCCGAAAAAAGAAATCCAAGCGGGATTAG
AA sequence Show only first row Show all	>Potri.007G065500.1 pacid=42765804 polypeptide=Potri.007G065500.1.p locus=Potri.007G065500 ID=Potri.007G065500.1.v4.1 annot-version=v4.1 MEADGAENTDISNTKKPKHKGKHDKPKPWDEDPNIDRWKIEKFDPSWNQGGMVDVSSFSTLFPKYREKYLTDAWPMVKSALKEFGIDCELNKNEGSMTVK TTIKTRDPYIIVKARDLIKLLSRSVPAPQAIKILNDDMSCDIIKIGNMIRNKERFVKRRQNLVGPNSSTLKALELLTGCYILVQGNTVAAMGSFKGLKQV RRIVEDCIQNKMHPVYHIKILMMKKELEKDPALKNENWDRFLPKYKKKTVKQKKVKSKKKKQDTPFPPPQQPSMEDIQLETGEYFLSDKKKQAKKWHEKQ EKQLEKTAENKRKRDAAFVPPKELVKEDPSTYADNNKDVAAMAMSLKKKAKEFGKQKSFENVNPEDYIATSGEQPRKKKSKRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08420			RNA-binding KH domain-containi...		Potri.007G065500 [exp]	0	1
AT3G11450			DnaJ domain ;Myb-like DNA-bind...		Potri.001G035800 [exp]	4.47	0.7286
AT3G18600			P-loop containing nucleoside t...		Potri.001G250700 [exp]	7.34	0.7387
AT4G26600			S-adenosyl-L-methionine-depend...		Potri.001G369600 [exp]	9.05	0.7418
AT5G27380		GSHB, GSH2	glutathione synthetase 2 (.1)		Potri.013G026800 [exp]	11.31	0.6173
AT1G63980			D111/G-patch domain-containing...		Potri.003G132600 [exp]	12.64	0.6477
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Potri.002G213500 [exp]	15.65	0.7236
AT5G51130			S-adenosyl-L-methionine-depend...		Potri.018G084700 [exp]	21.21	0.6607
AT5G17930			MIF4G domain-containing protei...		Potri.013G061400 [exp]	21.58	0.7395
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Potri.002G241100 [exp]	22.29	0.6983
AT3G56990		EDA7	embryo sac development arrest ...		Potri.016G037400 [exp]	24.00	0.6846

Compare expression of checked genes

Potri.007G065500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.