Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-LOS1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56070 1621 / 0 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 1516 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT1G06220 581 / 0 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G25230 575 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G22980 411 / 6e-129 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT5G39900 107 / 6e-24 Small GTP-binding protein (.1) AT5G13650 107 / 1e-23 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT2G31060 98 / 7e-21 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT5G08650 97 / 1e-20 Small GTP-binding protein (.1) AT1G62750 92 / 8e-19 ATSCO1, ATSCO1/CPEF-G SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G065700 [exp] 1716 / 0 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.005G098100 [exp] 1661 / 0 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.018G114900 [exp] 589 / 0 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.006G190600 [exp] 586 / 0 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.009G152500 [exp] 431 / 3e-136 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.017G079800 [exp] 103 / 1e-22 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.001G305300 [exp] 99 / 4e-21 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.006G053000 [exp] 99 / 4e-21 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.013G123700 [exp] 97 / 2e-20 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031763 [exp] 1394 / 0 AT1G56070 1418 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031201 [exp] 1394 / 0 AT1G56070 1415 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031186 [exp] 884 / 0 AT1G56070 902 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031779 [exp] 770 / 0 AT3G12915 760 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031129 [exp] 581 / 0 AT1G06220 1751 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10034111 [exp] 575 / 0 AT1G06220 1761 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031185 [exp] 498 / 1e-171 AT1G56070 504 / 6e-175 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10004749 [exp] 417 / 1e-131 AT3G22980 1376 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10043478 [exp] 304 / 1e-95 AT1G06220 729 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10043477 [exp] 230 / 1e-66 AT1G06220 828 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain CL0437 [poplar] [flax] EF-G_C PF00679 [poplar] [flax] EFG_C Elongation factor G C-terminus CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0329 [poplar] [flax] S5 PF03764 [poplar] [flax] EFG_IV Elongation factor G, domain IV CL0437 [poplar] [flax] EF-G_C PF14492 [poplar] [flax] EFG_III Elongation Factor G, domain III
Representative CDS sequence Show only first row Show all	>Potri.007G065600.3 pacid=42766105 polypeptide=Potri.007G065600.3.p locus=Potri.007G065600 ID=Potri.007G065600.3.v4.1 annot-version=v4.1 ATGGTTAAGTTTACGGCAGAAGAGCTTCGGCGTATTATGGACTTCAAGCATAACATCCGTAATATGTCTGTTATTGCTCATGTTGACCATGGAAAATCAA CTCTCACTGATTCTCTTGTTGCTGCTGCTGGTATCATTGCCCAAGAGGTTGCTGGTGATGTTCGAATGACTGATACCCGGGCAGATGAGGCAGAACGTGG TATCACAATCAAATCTACTGGCATCTCTCTATACTATGAGATGTCAGATGAATCCCTCAAGAGATACAAGGGAGAGAGGCATGGAAATGAGTATCTTATC AATCTTATAGACTCTCCAGGACACGTTGACTTTTCATCTGAGGTCACAGCTGCTCTTCGTATCACTGATGGCGCTCTGGTCGTTGTGGACTGTATTGAGG GTGTGTGTGTCCAGACTGAAACTGTGCTTCGACAGGCTTTGGGTGAGAGGATCAGGCCTGTCCTGACAGTTAACAAGATGGACAGGTGTTTCCTGGAGCT CCAGGTTGATGGAGAGGAGGCGTTTCAGACATTTTCTAGGGTTATTGAGAATGCCAATGTCATCATGGCAACCTATGAAGATCCCCTCCTTGGTGACTGT CAAGTCTACCCTGAGAAGGGTACCGTTGCTTTCTCTGCTGGTTTGCACGGCTGGGCTTTCACTTTGACCAACTTTGCCCAGATGTATGCCTCGAAGTTTG GAGTGGATGAGTCTAAGATGATGGAGAGGCTGTGGGGCGAGAACTTTTTTGATCCTGCTACCAAGAAGTGGACCACCAAGAACACTGGTTCTGCTACTTG CAAGCGTGGTTTTGTGCAGTTTTGTTATGAGCCAATCAAACAGATTATTAAAACGTGCATGAATGATCAGAAGGATAAATTGTGGCCCATGTTGCAAAAG CTTGGTGTTGTCATGAAGTCTGATGAGAAGGACTTGATGGGAAAGCCTCTGATGAAGCGTGTGATGCAGACCTGGCTGCCAGCAAGCACTGCTCTGCTTG AAATGATGATCTTTCACCTGCCCTCTCCTGCAACGGCTCAGAGATACCGTGTGGAGAACTTGTATGAGGGTCCCCTTGATGATGCTTATGCCAATGCTAT CAGGAATTGTGACCCTAATGGCCCCCTCATGCTCTACGTGTCTAAGATGATTCCTGCTTCTGACAAGGGTAGGTTCTTTGCCTTTGGACGTGTTTTCGCT GGAAAGGTAACAACTGGTCTGAAGGTTAGGATCATGGGACCAAACTATGTGCCTGGTGAGAAGAAGGACTTGTATGTGAAGAGTGTGCAGAGGACTGTTA TTTGGATGGGGAAGAGGCAAGAAACCGTTGAGGATGTGCCTTGTGGTAACACTGTTGCCTTGGTTGGATTGGATCAGTTCATCACTAAGAATGCCACTTT AACTAATGAAAAGGAAGTTGATGCCCACCCTATTCGTGCTATGAAGTTCTCTGTCTCGCCTGTTGTGCGTGTGGCCGTTCAGTGCAAGGTAGCATCTGAC CTCCCCAAGCTGGTGGAAGGTCTGAAGCGTTTGGCCAAGTCTGATCCCATGGTTGTCTGTAGCATTGAGGAATCTGGAGAGCATATCATTGCTGGAGCTG GAGAGCTGCACCTTGAGATCTGTTTGAAGGATTTGCAGGATGATTTTATGGGTGGGGCAGAAATCATCAAGTCTGACCCTGTTGTGTCGTTCCGTGAGAC TGTCATAGATAAGTCCTGCCGTGTGGTGATGAGCAAATCTCCTAACAAGCACAACCGTCTCTACATGGAGGCACGACCCATGGAAGAAGGGCTTGCAGAG GCTATTGATGATGGTCGTATTGGTCCAAGAGATGATCCAAAGATTCGTGGCAAGATCTTGTCCGAGGAGTTTGGTTGGGACAAGGATCTTGCAAAGAAAA TCTGGTGCTTTGGTCCTGAGACCACCGGGCCAAACATGGTTGTGGATATGTGTAAGGGAGTTCAGTACCTTAATGAAATCAAGGATTCTGTTGTTGCTGG TTTCCAGTGGGCTTCAAAGGAAGGTGCCTTGGCTGAAGAAAACATGCGAGGTATCTGCTTTGAAGTCTGTGATGTGGTTCTTCATTCCGATGCCATTCAC AGAGGTGGTGGGCAGGTCATTCCTACTGCCAGGAGGGTTATCTATGCCTCCCAGCTGACTGCCAAGCCCAGGCTCCTTGAGCCCGTGTACATGGTGGAGA TCCAAGCCCCCGAGCAGGCTCTTGGTGGCATCTACAGTGTTCTTAACCAGAAACGTGGTCATGTGTTTGAAGAAATTCAGAGGCCCGGTACCCCCCTGTA CAATATCAAGGCGTACCTCCCTGTTGTCGAGTCTTTTGGATTTTCCGGCACTTTGAGGGCTGCAACATCAGGACAGGCTTTCCCACAATGTGTTTTTGAT CACTGGGACACGATGTCTTCTGATCCAATGGAAGCCGGTACACAAGCAGCACAGCTTGTTACAGAAATCAGGAAGCGAAAGGGTTTGAAGGAGCAGATGA CCCCATTATCTGATTTCGAGGACAAGCTGTGA
AA sequence Show only first row Show all	>Potri.007G065600.3 pacid=42766105 polypeptide=Potri.007G065600.3.p locus=Potri.007G065600 ID=Potri.007G065600.3.v4.1 annot-version=v4.1 MVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMSDESLKRYKGERHGNEYLI NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAFQTFSRVIENANVIMATYEDPLLGDC QVYPEKGTVAFSAGLHGWAFTLTNFAQMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIIKTCMNDQKDKLWPMLQK LGVVMKSDEKDLMGKPLMKRVMQTWLPASTALLEMMIFHLPSPATAQRYRVENLYEGPLDDAYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFA GKVTTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVALVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASD LPKLVEGLKRLAKSDPMVVCSIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVIDKSCRVVMSKSPNKHNRLYMEARPMEEGLAE AIDDGRIGPRDDPKIRGKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHSDAIH RGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEIQRPGTPLYNIKAYLPVVESFGFSGTLRAATSGQAFPQCVFD HWDTMSSDPMEAGTQAAQLVTEIRKRKGLKEQMTPLSDFEDKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.007G065600 [exp]	0	1	Pt-LOS1.2
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.007G065700 [exp]	1.00	0.9123	LOS1.1
AT2G33840			Tyrosyl-tRNA synthetase, class...		Potri.010G248900 [exp]	1.41	0.9086
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Potri.006G153900 [exp]	1.73	0.8955	Pt-SYNC3.1
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Potri.009G044300 [exp]	2.82	0.8852
AT4G17520			Hyaluronan / mRNA binding fami...		Potri.002G138300 [exp]	3.16	0.8370
AT2G27775			unknown protein		Potri.009G148400 [exp]	3.46	0.8285
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Potri.003G186900 [exp]	5.65	0.7922
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Potri.007G137200 [exp]	6.24	0.7854
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.010G156500 [exp]	7.74	0.7627
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Potri.018G000500 [exp]	8.77	0.7981

Compare expression of checked genes

Potri.007G065600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.