Plant FIBer expression Database

Potri.007G065800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16560 541 / 0 Per1-like family protein (.1.2.3.4)
AT5G62130 449 / 2e-159 Per1-like family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G134300
[exp]
538 / 0 AT1G16560 466 / 8e-166 Per1-like family protein (.1.2.3.4)
Potri.015G136600
[exp]
520 / 0 AT1G16560 477 / 2e-170 Per1-like family protein (.1.2.3.4)
Potri.002G177300
[exp]
72 / 7e-16 AT1G16560 0 / 1 Per1-like family protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031765
[exp]
558 / 0 AT1G16560 496 / 2e-171 Per1-like family protein (.1.2.3.4)
Lus10031187
[exp]
555 / 0 AT1G16560 495 / 2e-177 Per1-like family protein (.1.2.3.4)
Lus10015006
[exp]
476 / 1e-169 AT1G16560 419 / 2e-147 Per1-like family protein (.1.2.3.4)
Lus10038885
[exp]
473 / 2e-168 AT1G16560 417 / 2e-146 Per1-like family protein (.1.2.3.4)
Lus10027411
[exp]
439 / 2e-155 AT1G16560 393 / 5e-137 Per1-like family protein (.1.2.3.4)
Lus10031658
[exp]
360 / 7e-124 AT5G62130 328 / 3e-111 Per1-like family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0192 GPCR_A PF04080 Per1 Per1-like family
Representative CDS sequence
>Potri.007G065800.2 pacid=42766384 polypeptide=Potri.007G065800.2.p locus=Potri.007G065800 ID=Potri.007G065800.2.v4.1 annot-version=v4.1
ATGGTAGATCGATATTGGGTTGGTTTCTTTCTGGTGTTTTCATGTCTTGGTGGAACCTTAGATGCTAGTGCTGGGGATTCTGATCCCATTTACAGGACTT
GTGTTGGACAATGTGAAAAATCTGGATGTGTGGGGCAAAGATGCTTTTCACACTGCAATTTTTCTTCTGATGGTGTCTCCATTGATGGTCCGTGGTACAA
GCAAGAACCTCTTTACTTGCAATGGAAACAATGGGATTGCCAAAGTGATTGTCGTTATTATTGTATGCTGGATAGAGAGAAAGAAAGAGAAGCACTTGGT
CATGGTCCTGTCAAGTACCATGGTAAATGGCCCTTCAAGCGTGTATATGGAATTCAGGAGCCTGTTTCTGTTGCTTTCTCTGCCCTTAACCTTGCAATGC
ATTTCCATGGTTGGCTATCCTTTTTCATTCTTCTCTACTACAAGTTGCCTCTGAAACAAGATAAAAAGGCCTACTATGAGTATGCCTCTTTGTGGCATAT
CTATGGGTTCTTATCATTGAACTCCTGGTTCTGGAGTGCTGTTTTCCATAGCCGAGATGTGGACTTGACAGAAAAGTTAGACTATTCTTCTGCAGTGGCA
TTTTTAGGGTACTCACTAATTATGTCTATATTAAGAAGTTTCAATGTGAGGGATGAAGCTGCAAGGGTCATGGTTGCCGCACCACTACTTGCTTTTCTGA
CTACTCATATACTGTTCATCAACTTCTATAAACTAGACTACGGGTGGAACATGCAAGTTTGTGTTGTGATGGCAGTTGCTCAGCTTCTCCTGTGGGCCAT
TTGGGCTGGTGTCACCGGCCATCCTTCTCGCTGGAAGTTGTGGGTAGTGGTAATTGGAGGTGGCCTGGCAATGCTCTTAGAAATCTATGATTTCCCTCCA
TATGAAGGATATGTGGATGCCCATGCGCTTTGGCATGCCACCACAATCCCTCTTACCTACATTTGGTGGAGTTTCATCAGGGATGATGCCGAGTTCCGCA
CCTCTAATCTCCTTAAGAAGACTAAGTAG
AA sequence
>Potri.007G065800.2 pacid=42766384 polypeptide=Potri.007G065800.2.p locus=Potri.007G065800 ID=Potri.007G065800.2.v4.1 annot-version=v4.1
MVDRYWVGFFLVFSCLGGTLDASAGDSDPIYRTCVGQCEKSGCVGQRCFSHCNFSSDGVSIDGPWYKQEPLYLQWKQWDCQSDCRYYCMLDREKEREALG
HGPVKYHGKWPFKRVYGIQEPVSVAFSALNLAMHFHGWLSFFILLYYKLPLKQDKKAYYEYASLWHIYGFLSLNSWFWSAVFHSRDVDLTEKLDYSSAVA
FLGYSLIMSILRSFNVRDEAARVMVAAPLLAFLTTHILFINFYKLDYGWNMQVCVVMAVAQLLLWAIWAGVTGHPSRWKLWVVVIGGGLAMLLEIYDFPP
YEGYVDAHALWHATTIPLTYIWWSFIRDDAEFRTSNLLKKTK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G16560 Per1-like family protein (.1.2... Potri.007G065800
[exp]
0 1
AT2G26260 AT3BETAHSD/D2 3beta-hydroxysteroid-dehydroge... Potri.006G218400
[exp]
1.41 0.9120
AT3G56750 unknown protein Potri.006G040400
[exp]
5.47 0.9037
AT2G44680 CKB4 casein kinase II beta subunit... Potri.014G052100
[exp]
7.34 0.8904 Pt-CKB3.1
AT2G42310 unknown protein Potri.016G051400
[exp]
7.34 0.9042
AT5G17190 unknown protein Potri.010G108000
[exp]
8.36 0.9017
AT5G55190 RAN3, ATRAN3 RAN GTPase 3 (.1) Potri.006G250300
[exp]
10.39 0.8980 Pt-RAN1.2
AT1G64520 RPN12A regulatory particle non-ATPase... Potri.001G088200
[exp]
12.24 0.9025
AT4G22330 ATCES1 Alkaline phytoceramidase (aPHC... Potri.017G057500
[exp]
12.64 0.8924
AT2G36530 ENO2, LOS2 LOW EXPRESSION OF OSMOTICALLY ... Potri.015G131100
[exp]
14.38 0.8426
AT5G42570 B-cell receptor-associated 31-... Potri.011G007200
[exp]
14.83 0.8983

Potri.007G065800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.