Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56970 499 / 3e-173 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT2G19500 453 / 3e-155 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT4G29740 451 / 4e-154 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT1G75450 433 / 9e-147 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT3G63440 388 / 2e-129 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT2G41510 384 / 3e-127 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT5G21482 360 / 2e-118 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152500 [exp] 629 / 0 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.005G232300 [exp] 465 / 2e-159 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.002G030500 [exp] 452 / 1e-154 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.003G203600 [exp] 389 / 6e-130 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.001G020900 [exp] 385 / 2e-128 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.006G047900 [exp] 381 / 2e-126 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.016G044100 [exp] 376 / 1e-124 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G221000 [exp] 353 / 5e-116 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031188 [exp] 563 / 0 AT5G56970 484 / 1e-167 cytokinin oxidase 3 (.1) Lus10031200 [exp] 509 / 5e-177 AT2G19500 464 / 1e-159 cytokinin oxidase 2 (.1) Lus10031765 [exp] 443 / 2e-147 AT1G16560 496 / 2e-171 Per1-like family protein (.1.2.3.4) Lus10024289 [exp] 422 / 1e-142 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10027611 [exp] 359 / 4e-119 AT5G56970 407 / 3e-138 cytokinin oxidase 3 (.1) Lus10003845 [exp] 335 / 3e-110 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10026471 [exp] 334 / 2e-108 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10016363 [exp] 258 / 9e-81 AT3G63440 483 / 9e-169 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10005317 [exp] 253 / 1e-78 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10039574 [exp] 254 / 3e-78 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF09265 [poplar] [flax] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Potri.007G066100.1 pacid=42765651 polypeptide=Potri.007G066100.1.p locus=Potri.007G066100 ID=Potri.007G066100.1.v4.1 annot-version=v4.1 ATGCACACGCACATCCCTCCTTTCGTCTTCACTAATCACCACCATCCTCGAGCCTTATCCTCCTTTCATCTCCTTGATTTTCTTCAAAAAAATAAAATTA TGGCGAAAAGTCCTTCAACTCCAATCCATCTCTTAGTTATGTTACTAGTAACATATTTTTTGTGCACCATGGGAAAATCAAATGCGTTGACATGCCCACT ACCACCGGAACTAGCAACTAAGCTTCATGTTGATCCAGTAGCCATAGATTCAGCATCTACTGATTACGGTAACATAGTCCATAGCACGCCAGCTGCTGTT CTTTATCCATCATCCATTGAAGATATTCAAATACTAGTAAATTCCTCGTACAATTGTCCCATTCCATTTGGTATATCTGTTAGGGGAAATGGCCATTCTG TTAATGGACAGGACATGGCTCGTGATGGGGTGGTAGTGGATATGAAAAGTTTGAGAGAAGATAAAAATGGGATCAAAATTAGGGTTTCTAAAAACCATTT ATTCGCTGATGTTGGAGGTGAGCAATTATGGATTGATGTGTTACACACCACTGCAGCACAAGGACTTTCACCGGTGTCGTGGACCGACTTTTTGTACCTA AGTGTTGGTGGTACGCTTTCTAATGCTGGAGTCAGTGGGCAAACATTTCTGCATGGCCCTCAGATTAGCAATGTTTATGAACTAGATGTTATAACTGGAA AAGGGGAGCTTGTGACCTGCTCTAAAAGAAATAATTCAGATCTATTTGATTCTGTTCTGGGAGGTTTAGGCCAATTTGGGATTATAACTAGAGCAAGGAT TGCTTTAAGGTCGGCACCAACAAAAGTTAGGTGGTCTCGAGCATTTTACAGTAATTTCTCTGATTTTATCAGAGACCAAGAAAGAATAGTTAGGGGTGGC CAAAGAGATGTAGCCAATTATTTGGAAGGTTCACTTATGTTGGATAATGGCACCCCAACTGAGTGGATAACCTCCTTTTTTCATCCAACTCAGCTCCCTC AAATTATGTCCTTGGTTAAAACATATGGTATCATCTACTGTCTTGAGCTTACCAAGTACTACTTCATAGAAGATATAGAGAGTGAAATAGACCAGGATTT ACAACAAGTATTCAAAGACTTTTCTCATGTTCCTGGTTTAATCAATGCAAAATTTGTCTCCTATCAAGAATTTTTGACGAGAGTCCCAAATGCTGAGAAT GAATCACAGACACATCCATGGCAAAATCTATTTATTCCCCAATCTCGAATTTCAGATTTCAACGTAGGTGTCTTGAGAGATATTGTTCTTAAAAGAAACA TCACCACAGGACCTGTCCTCTTTTACCCTTTGAACCGACACAAATGGGATGCTGAGTTGTCTGCAGTTATACCAGATGAAGATATCTTTTATACGACATC GTTCTTGCATACAAGTGGGATTGATAATTGGCAGGTCTACGAAGATCAAAATCAAGCAGTTATTAAATTTTGTGAAGAGGCTGGTATCAAGATTGTGAAA TATCTTGCTGATTATACAACCATAGAAGAATGGATTAAGCATTTTGGCTCAAAATGGACAACCTTTCGAGAGAGGAAAGCGCAATATGATCCAAAGAATA TCCTATCGCCAGGGCAAAAAATATTCAATGCCGTTTAG
AA sequence Show only first row Show all	>Potri.007G066100.1 pacid=42765651 polypeptide=Potri.007G066100.1.p locus=Potri.007G066100 ID=Potri.007G066100.1.v4.1 annot-version=v4.1 MHTHIPPFVFTNHHHPRALSSFHLLDFLQKNKIMAKSPSTPIHLLVMLLVTYFLCTMGKSNALTCPLPPELATKLHVDPVAIDSASTDYGNIVHSTPAAV LYPSSIEDIQILVNSSYNCPIPFGISVRGNGHSVNGQDMARDGVVVDMKSLREDKNGIKIRVSKNHLFADVGGEQLWIDVLHTTAAQGLSPVSWTDFLYL SVGGTLSNAGVSGQTFLHGPQISNVYELDVITGKGELVTCSKRNNSDLFDSVLGGLGQFGIITRARIALRSAPTKVRWSRAFYSNFSDFIRDQERIVRGG QRDVANYLEGSLMLDNGTPTEWITSFFHPTQLPQIMSLVKTYGIIYCLELTKYYFIEDIESEIDQDLQQVFKDFSHVPGLINAKFVSYQEFLTRVPNAEN ESQTHPWQNLFIPQSRISDFNVGVLRDIVLKRNITTGPVLFYPLNRHKWDAELSAVIPDEDIFYTTSFLHTSGIDNWQVYEDQNQAVIKFCEEAGIKIVK YLADYTTIEEWIKHFGSKWTTFRERKAQYDPKNILSPGQKIFNAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Potri.007G066100 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G026100 [exp]	2.00	0.9815
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G025900 [exp]	2.82	0.9799
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G026032 [exp]	3.46	0.9794
					Potri.006G059900 [exp]	3.87	0.9507
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G025966 [exp]	4.00	0.9761
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.005G223300 [exp]	4.89	0.9501
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G189066 [exp]	6.48	0.9008
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Potri.004G167000 [exp]	8.36	0.9340
AT1G64160			Disease resistance-responsive ...		Potri.013G142401 [exp]	8.48	0.9440
AT2G43870			Pectin lyase-like superfamily ...		Potri.007G144100 [exp]	9.16	0.9464

Compare expression of checked genes

Potri.007G066100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.