Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ABA3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16540 1071 / 0 ACI2, ABA3, SIR3, LOS5, ATABA3 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) AT1G30910 108 / 1e-25 Molybdenum cofactor sulfurase family protein (.1) AT5G44720 91 / 1e-19 Molybdenum cofactor sulfurase family protein (.1.2) AT4G37100 87 / 2e-17 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G66950 79 / 1e-14 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G23520 78 / 2e-14 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G51920 68 / 1e-11 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G131300 [exp] 87 / 3e-17 AT2G23520 1227 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G137900 [exp] 82 / 1e-15 AT5G51920 464 / 3e-157 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G036100 [exp] 81 / 2e-15 AT2G23520 1236 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G111600 [exp] 78 / 2e-14 AT4G22980 431 / 2e-144 unknown protein Potri.003G120500 [exp] 68 / 2e-11 AT5G51920 487 / 3e-166 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.003G154900 [exp] 65 / 4e-11 AT1G30910 332 / 3e-114 Molybdenum cofactor sulfurase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031768 [exp] 1112 / 0 AT1G16540 1021 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Lus10031190 [exp] 1104 / 0 AT1G16540 1012 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Lus10018692 [exp] 110 / 4e-26 AT1G30910 432 / 2e-153 Molybdenum cofactor sulfurase family protein (.1) Lus10007754 [exp] 106 / 7e-25 AT1G30910 435 / 1e-154 Molybdenum cofactor sulfurase family protein (.1) Lus10006342 [exp] 87 / 3e-17 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022472 [exp] 86 / 5e-17 AT2G23520 1238 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10016776 [exp] 86 / 7e-17 AT2G23520 1229 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10015013 [exp] 84 / 2e-16 AT5G51920 570 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10038892 [exp] 81 / 2e-15 AT5G51920 578 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10019650 [exp] 78 / 2e-14 AT4G37100 1186 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00266 [poplar] [flax] Aminotran_5 Aminotransferase class-V CL0061 [poplar] [flax] PF03473 [poplar] [flax] MOSC MOSC domain CL0061 [poplar] [flax] PF03476 [poplar] [flax] MOSC_N MOSC N-terminal beta barrel domain
Representative CDS sequence Show only first row Show all	>Potri.007G066400.5 pacid=42766736 polypeptide=Potri.007G066400.5.p locus=Potri.007G066400 ID=Potri.007G066400.5.v4.1 annot-version=v4.1 ATGGATGCAGACAAGGCTGAGTTCTTGAAGGAATTCGGTTCCGACTATGGTTATCCAAACGGTCCAAAATCTATCGACGAAATTCGAGCCACTGAATTTA ATCGATTAGACCAAAAGGGTATTGTATATTTAGATCATGCTGGTGCTACTTTATACTCTGAGTTACAAATGGAAGAAATCTTTAAAGATTTCAACTCAAA TATCTATGCAAACCCACATAGCCAAAGTGTTTCAAGTTCTGCAACATCTGATATTATAAGAGAAGTTCGACAACAGGTGCTTGATTATTGCAATGCATCT GCTAAAGAGTATAAATGCATATTTACTTCTGGGGCCACCGCGGCTTTGAAGTTGGTTGGGGAGGCGTTTCCCTGGAGTAGGGAGAGTTGTTTTATGTATA CTATGGAGAATCATAATAGTGTGCTTGGTATTAGAGAATATGCTCTCAGTAAAGGGGCTGCTGCATTTGCAGTAGATGTTGAAGACAATGTTAATGGAGG TGGAGCATCTGGAGGCCAGGAGGCACGGGTGAAGTTATCACCACATGCAACGCAAAGGAGGAATGAAGCTAAAATTCTAGAAGAGGAGCCAACTGGAAAT GCTTATAACCTATTTGCATTCCCTTCTGAATGCAATTTCTCTGGTTTGAGATTCAGTCTCGACTTGGCTAATCTTATTAAGGAAAATTCAGAAAGAATTT TGGAAGGCTCTCCTTTTTGCAAGGGTCACTGGATTGTTTTGATTGATGCTGCAAAAGGATGTACTACATGCCCTCCAGATTTATCCAAGTACGCTGTGGA TTTTGTTGTAATCTCTTTCTATAAGCTATTTGGCTATCCAACTGGACTTGGTGCTCTTGTTGTTCAAAATGATGCTGCCAGGTTGATGAAGAAGACTTAC TTCAGCGGAGGCACAGTTGCTGCATCGTTTGCTGACATGGACTTTGTTAGAAGAAGAGAAGGTATTGAAGAGCTTTTTGAGGATGGCACCATTTCATTTC TGAGTATAGCATCAATACGCCATGGGTTCAAAATCCTCAATTCCCTAACTCCATCCATGATGAGTCGGCATATTGCAGCACTTACCATGTATGTCAAGAA GATGCTTTTGGGCCTAAGGCATGAAAATGAAGCTAATGTTTGCATCATTTATGAAGGTCATACTTCAAAGTTAGTTTGTCATGAATCAGGTTCCATAGTG TCATTCAACTTGAAAAGGCCTGATGGCTCTTGGTTTGGATACAGTGAGGTGGAAAAACTCGCTTCCTTATCTGGAATTCAGTTACGGACAGGATGCTTTT GTAATCCAGGAGCATGTGCAAAATATCTTGGCTTGTCTCACCTGGATCTTCTTTCAAACTTAGAGGCTGGTCATGTTTGCTGGGATGATAATGATATTAT ACAAGGAAAACTAACTGGGGCTGTTAGAGTGTCATTTGGTTACATGTCTACGTATGAAGATGCCAAGAAATTGATTGATTTTATCACAAGTTTATTTGTA TCAAAGCCAAATAAGTCAGAAAACTGGAATATGTTGAGAACAAAATCCATCCTCTTGTCAAATGAAGGCCATGAAAGAAAAGCTGGTTATTACCTCAAGT CTATAACAGTTTACCCAATAAAATCATGTACAGGATTCAGTGTGGAAAGTTGGCCTCTGAGCAGCACTGGTTTGCAACATGATCGAGAATGGCTTCTTAA AAGTCTAAGCGGTGAAATCCTTACACAGAAAAAGGTTCCTGACATGTGCTCTATTAGTGCTTATATTGACCTCAATAAGGGAATAATGTTTGTAGAATCC CCTCGATGTAGAGAAAAATTGGAGATCAACCTGAAGACAGATTCATATCCAGGTGGGATAGAGGAGATTGAGTTGCATGCCCAGAGATATGAAGTCCAAT ATTATGAGAATGATGTCGACTTGTGGTTTAGCCGTGCTGTTGGCCATCCTTGCTCTTTATTAAGATGTTGTAGTTCCCAGAATTACTCCAGCTTGAAGAA GAATAAAAGCAGGAACTTGTGCAGAGATGTGGAGAGCAGATTGAATTTTGCCAATGAAGCTCAGTTCTTATTGATATCAGAGGAGAGTGTGTCCGACCTC AACAACAGATTGAGCTTAATAGATGCACAAAAAGGAACTCGTGGAACATCAGTTCAAATCAATCCAATGAGATTCCGGCCCAACCTGGTTGTATATGGAG GTGAGCCTTATGCCGAAGATGGATGGCTAAATATCAAAATCGGAAATAAGAATTTTATGTCGCTGGGTGGATGCAACCGCTGCCAGATGATCAATTTAGT TCATCAAGCTGGACTAGTGCAGAGGTCAAATGAGCCTTTAGCAACTTTGGCTTCATACAGGAGAGTGAAGGGGAAGATTTTATTTGGAATATTGTTGAGA TATGAGATTCAGGATAAGATGGGGATGCAAACAGGGTCATGGCTTCGAGTGGGAGAAGAAATACATCCAAATTCAGAATAG
AA sequence Show only first row Show all	>Potri.007G066400.5 pacid=42766736 polypeptide=Potri.007G066400.5.p locus=Potri.007G066400 ID=Potri.007G066400.5.v4.1 annot-version=v4.1 MDADKAEFLKEFGSDYGYPNGPKSIDEIRATEFNRLDQKGIVYLDHAGATLYSELQMEEIFKDFNSNIYANPHSQSVSSSATSDIIREVRQQVLDYCNAS AKEYKCIFTSGATAALKLVGEAFPWSRESCFMYTMENHNSVLGIREYALSKGAAAFAVDVEDNVNGGGASGGQEARVKLSPHATQRRNEAKILEEEPTGN AYNLFAFPSECNFSGLRFSLDLANLIKENSERILEGSPFCKGHWIVLIDAAKGCTTCPPDLSKYAVDFVVISFYKLFGYPTGLGALVVQNDAARLMKKTY FSGGTVAASFADMDFVRRREGIEELFEDGTISFLSIASIRHGFKILNSLTPSMMSRHIAALTMYVKKMLLGLRHENEANVCIIYEGHTSKLVCHESGSIV SFNLKRPDGSWFGYSEVEKLASLSGIQLRTGCFCNPGACAKYLGLSHLDLLSNLEAGHVCWDDNDIIQGKLTGAVRVSFGYMSTYEDAKKLIDFITSLFV SKPNKSENWNMLRTKSILLSNEGHERKAGYYLKSITVYPIKSCTGFSVESWPLSSTGLQHDREWLLKSLSGEILTQKKVPDMCSISAYIDLNKGIMFVES PRCREKLEINLKTDSYPGGIEEIELHAQRYEVQYYENDVDLWFSRAVGHPCSLLRCCSSQNYSSLKKNKSRNLCRDVESRLNFANEAQFLLISEESVSDL NNRLSLIDAQKGTRGTSVQINPMRFRPNLVVYGGEPYAEDGWLNIKIGNKNFMSLGGCNRCQMINLVHQAGLVQRSNEPLATLASYRRVKGKILFGILLR YEIQDKMGMQTGSWLRVGEEIHPNSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	0	1	Pt-ABA3.1
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.003G220800 [exp]	1.73	0.9088
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Potri.004G094200 [exp]	2.44	0.8622
AT1G20760			Calcium-binding EF hand family...		Potri.007G063200 [exp]	4.47	0.8528
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.002G232800 [exp]	4.58	0.8437
AT2G39580			unknown protein		Potri.008G052500 [exp]	5.47	0.8528
AT1G05270			TraB family protein (.1)		Potri.007G121800 [exp]	6.32	0.8431
AT3G22430			unknown protein		Potri.008G024500 [exp]	6.92	0.8373
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.004G104201 [exp]	7.74	0.8402
AT3G18310			unknown protein		Potri.012G041300 [exp]	7.87	0.8185
AT3G50430			unknown protein		Potri.005G133500 [exp]	7.93	0.8427

Compare expression of checked genes

Potri.007G066400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.