Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33870 253 / 2e-80 Peroxidase superfamily protein (.1) AT1G49570 231 / 7e-73 Peroxidase superfamily protein (.1) AT5G17820 225 / 8e-71 Peroxidase superfamily protein (.1) AT5G15180 224 / 5e-70 Peroxidase superfamily protein (.1) AT5G06720 219 / 3e-68 ATPA2 peroxidase 2 (.1) AT4G36430 218 / 1e-67 Peroxidase superfamily protein (.1) AT1G05250 212 / 1e-65 Peroxidase superfamily protein (.1) AT1G05240 212 / 1e-65 Peroxidase superfamily protein (.1) AT3G50990 212 / 3e-65 Peroxidase superfamily protein (.1) AT2G41480 212 / 3e-65 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G182400 [exp] 244 / 1e-75 AT4G33870 254 / 2e-79 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 229 / 3e-72 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 228 / 6e-72 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 228 / 6e-72 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 228 / 6e-72 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 228 / 6e-72 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 228 / 8e-72 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 226 / 6e-71 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.006G069600 [exp] 216 / 2e-67 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012684 [exp] 226 / 5e-71 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1) Lus10018375 [exp] 225 / 1e-70 AT5G17820 293 / 1e-98 Peroxidase superfamily protein (.1) Lus10015555 [exp] 224 / 4e-70 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1) Lus10001324 [exp] 220 / 1e-68 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10013631 [exp] 219 / 2e-68 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1) Lus10020994 [exp] 219 / 6e-68 AT1G49570 418 / 5e-147 Peroxidase superfamily protein (.1) Lus10020826 [exp] 216 / 5e-67 AT2G41480 375 / 1e-130 Peroxidase superfamily protein (.1) Lus10005679 [exp] 215 / 1e-66 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) Lus10025586 [exp] 210 / 1e-64 AT5G24070 418 / 6e-147 Peroxidase superfamily protein (.1) Lus10009901 [exp] 209 / 2e-64 AT1G49570 384 / 5e-134 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.007G067200.2 pacid=42765214 polypeptide=Potri.007G067200.2.p locus=Potri.007G067200 ID=Potri.007G067200.2.v4.1 annot-version=v4.1 ATGGCAAAGTTAATGAAGAGAAAGACAAAGACACTTATAGTTATCTTCATAATCTCTGTGATTCTTTCTTTAAAATTTCCATCTGAAATAGAGGAGGAGG AAAGGGCCAAAAGAGAGAAGCTGGAAAAAGAAGAGAAAACATTTTCTGTTTTTCTACAAAGAGAGAGTGCCACAAGTACTCGAGAACGTGTTGTTTCTTT AGCTGATGAGCTTCACGGTCTTGAATACGATTTTTATCGCCAGAATTGTCCACAAGCTGAGTCCATTGTTAGATCAACAATGGCAAGGATTTACATGCAG CAAAATGATATTTCTTTTGGTCTTTTAAGGCTTCTTTTCCATGATTGCTTCATCAAGGGTTGTGATGCTTCAGTCTTCTTGGATGATAGCAATGGGAATA AAAACCGTTCCATTGAGAGGCAGGCCGCTCCGAACAAGACCTTGAGAGGTATTAATGAGATTGACATGATCAAGGAGGAGCTTGACAATGCATGCCCAGG AGTAGTTTCATGTGCTGACAGCCTTGCACTTGCCACCAGAGATGCTGTTGTGCTGGCTGGTGGTCCATTTTATCCAGTTTTTACAGGCAGGAGAGACAGT ACTCAATCCTACTTTGATGAAGCCATGGACGAGATTCCAAAGCCCAATGATAACATCACCCGAACACTTTTCCTCTTTTCCCGCAGAGGTTTTGATGAAA GAGAAACAGTCAATCTCTTAGGTACTTACTGTGCTCATAATGTGGGCAAAATCAGCTGTGACTTCATCCGGAATCGCCTCACTAACTTCTCTGGGACAGG ACAACCAGATGCCTCTGTAGATCATGATTTCCTAAATGAATTGAGACTTGCTTGTCAGGATAGCAACAGCACCAATCATGATGGAACTGTAGCTTCTATG ACATCAAGGGAGATGAGGAACTCTAGTTCGGCAATGATTTTCCAAGGATCATCCGCTTCTATACCATCCGGAGCACGTTTTGATAACCACTACTATCAGA ATTTGTTGGGGGGTAGAGGACTTCTATTTGCTGATCAACAATTGATGGCTGATGAGAATACTGCAAGATTTGTGGCAGTTTATGCTTCAGATGATGGAAC AACCTTTAGAAGGGACTTTTCCAGGTCCATGGTGAAGATGTCAAACCTTGGTGTCTTGACTGGAACTCTAGGTCAGGTCCGAAACAAATGCTCCTTTCCC ACCAGCCAATCTTGA
AA sequence Show only first row Show all	>Potri.007G067200.2 pacid=42765214 polypeptide=Potri.007G067200.2.p locus=Potri.007G067200 ID=Potri.007G067200.2.v4.1 annot-version=v4.1 MAKLMKRKTKTLIVIFIISVILSLKFPSEIEEEERAKREKLEKEEKTFSVFLQRESATSTRERVVSLADELHGLEYDFYRQNCPQAESIVRSTMARIYMQ QNDISFGLLRLLFHDCFIKGCDASVFLDDSNGNKNRSIERQAAPNKTLRGINEIDMIKEELDNACPGVVSCADSLALATRDAVVLAGGPFYPVFTGRRDS TQSYFDEAMDEIPKPNDNITRTLFLFSRRGFDERETVNLLGTYCAHNVGKISCDFIRNRLTNFSGTGQPDASVDHDFLNELRLACQDSNSTNHDGTVASM TSREMRNSSSAMIFQGSSASIPSGARFDNHYYQNLLGGRGLLFADQQLMADENTARFVAVYASDDGTTFRRDFSRSMVKMSNLGVLTGTLGQVRNKCSFP TSQS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33870			Peroxidase superfamily protein...		Potri.007G067200 [exp]	0	1
AT5G13760			Plasma-membrane choline transp...		Potri.001G261900 [exp]	41.18	0.6660
					Potri.019G129860 [exp]	69.33	0.6350
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.002G043300 [exp]	103.08	0.5862
					Potri.008G112132 [exp]	142.45	0.5772
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.013G017400 [exp]	174.89	0.5655	Pt-RALFL23.3

Compare expression of checked genes

Potri.007G067200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.