Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79190 1410 / 0 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016753 [exp] 1455 / 0 AT1G79190 1350 / 0.0 ARM repeat superfamily protein (.1) Lus10022448 [exp] 1408 / 0 AT1G79190 1267 / 0.0 ARM repeat superfamily protein (.1) Lus10001243 [exp] 409 / 2e-130 AT1G79190 344 / 1e-107 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G067700.1 pacid=42766245 polypeptide=Potri.007G067700.1.p locus=Potri.007G067700 ID=Potri.007G067700.1.v4.1 annot-version=v4.1 ATGGACGCTTTTAATCACCTGATCACCACCAATTTGAACCATCAAAACGATGACGTCAACGAAGAAGAAGAAGAAGAACAACAAGATATTATCAGCAGCG GTGTTGTGTTTTCGCAGCTAAAACCTTACTGTTTAGACCTTCTTCAACTCCTCCAAAACCCTAATCCTACTTCTTTTTCATCTTCAATTCCCTCACTTGT CCAATTCCTCCACGACTCTCCTCCTCCTTCTCTCCAACCTTTCTTCGACTACGTTCTATTCCCTCTCCTCCTCCTCCTCGACGCCGCCGTTGATTCTCGA AAACAAAATCCTAAGCCTCATAAAATAAGCGACAGAGTAGCCGAAGGAGTTGTTCAGTGCTTAGAAGAGTTGTTGAACAAGTGCTATTTAGTTTCCATTG ATCAGATGGTAGTGTTGATGAAGAAGTTGACGTATGCGGCCATGTTAACGGAAAATGAGGCTTCGGAGGAGTTTAGAGAAGGAGTGATTAAGTGTTTTAG GGCATTAATTGAGGGATTAAGTTCGTGTGGAGTTGAAGGCTGTTCATGTGAAGAAATTAATGGTTTGCCTGCGCTTGTAGAGGCCGGAGACAATCGGAAT GTGAATTCAGCCCGGGATTATTTAGGAGGGGAAGGAGAGTGTTTGGTTTCGTTTTTGAGGTCGCAGAGTGCTTCTGCTGCTGTTGGGCATTGGTTTTCAC TTCTTCTCAAAGCTGCAGATAATGAGGTTGCTAGAGGACATAGAGGGAGTGCGAAGATTCGGGTTGAAGCATTTTTGACTGTGCGTGGTCTTGTTGCTAA GATTGGTACTGCAGATGCATTGGCTTTCTTCTTACCTGGTGTTGTTAGTCAATTTGCAAAAGTTTTGCATATGTCAAAAACGATGATAAGTGGGGCAGCT GGAAGTGTGGAGGCTATTGACCAGGCAATTAGAGCCTTGGCTGAGTATCTGATGATAGTCCTTGAGGATGATGCTAATGTATCCAGTCTTGATAGATCTT TATGTGCTGGTTCTGGCTTTAATTCAAATAAGAAAGGATCTTCTATCCACTCAGTTCTTGATGAACTTCGCCAGTTACCCGTTAGCACTCAAAATCAGAG TAAAGTTGCAGCTGAAAATTCAGTTGCTGAAGCAGTAAAATCAGTTACTCCTGCATCTGAATTTCAAAGTGCTAAGCCTGGCAATGAAAAAGGAGCTTTG CATGTGGATCGCACAAGAGACTGGGTTGAGGAAACTTCAGCGCATGTGGATAGACTTTTGAGTGCAACCTTTCCACATATTTGTCTTCATCCAGCAAGAA AGGTGAGACAAGGACTGCTGGCTGTCATACGAGGGCTGTTATCAAAGTGCAGTTGCACTCTGAAGCAAAGCAAATCAATGTTTTTGGAGTGTCTATTTGT CTTGGTCGTTGATGAATGTGGAGACATTTCTGCACCTGCTCAGGAGTTTCTTGAATATTTACTCTCATCAAGCAGCAAACTTAATGTACAATCTGATGTT GCTGAGCTTTTTAGCAGGCTCGTCGAGAAGCTTCCAAAAGTGGTTTTCGGCAATGATGAATCACATGCGCTCTCACATGCCCAGCAATTACTTGTAGTTA TCTACTATTCTGGTCCCAAGTTTTTGATGGATCACCTTCAGTCTCCGGTAACAGCTGCAAGATTTTTGGATATTTTTGCCCTCAGTTTGAGTCAGAATTC AGTATTTACAGGTGCTCTTGACAAGCTTATGTTAGCAAGGCCATCTTCAATTGGATATCTTCACTCTATTGCTGAGTTGAAATCTAGTTCTCGATTTTCC TCTGATTACCAATCCATTGTGGATGTTGTTCCATCTGATAACCCAAACTCCAGAGATATCCATGGAAAAGCAATACAAAACCCTTCGCTCTCTCTGCAGG ACAATTCTGAGCTTCCACGCATGCCCCCTTGGTTTGGTAGTCAGAAATTATATCAGACTCTAGCAGGAATTCTTAGACTTGTAGGTTTATCTTTAATGAC AGACTCTAAAAGTGAAGGGCATATGTCAGTTGTCAGTGATATACCACTGGGTCACCTTCGTAAACTGGTTTCTGAGATCCGTGATAAGGAGTTTACTAAA GAAAGCTGGCAATCTTGGTATAACAGGACAGGTTCAGGCCAATTGCTGCGCCAGGCAAGCACTGCAGTGTGTATTCTGAATGAGATGATTTTTGGCCTCT CTGACCAAGCAGTTGATAATCTTATAAGATTGTTTCATACGTCTGAGTTAAACAGGGAAGGAGTTCAAGCACCTGATGCAAAAGGTGCTGATGCTCAGCC CAATACAGTTGAACATCCTGAGCGTACTCGATCTATTTGGAAGGTTTCACAGGAAAGAGTTGCTAGGAGTCATTTGAATGATTGTGTTGGTAGAATTGCA CACGAATATCTATCTTCTGAAGTGTGGAACCTTCCAATAGATCAAAAATCTTCTCTCGTACAGTCTGATGGTGAAGTTGAAGAAATTACCTTGCACTTCT TCCACGATACTGCCATGCTGCAACAGGTTATTATTGATGGGATAGGCATCTTTTCCATGTGCCTTGGGAAAGATTTCGCTTCCAGTTGGTTTCTTCATTC ATCCCTTTATTTGTTGCTTGAGAGTCTAATATGTTCAAACATCCAAGTTAGACAAGCTTCTGATGCTGTTTTACATGTCCTTTCCTGTGCATCGGGCCAT CCAACGGTTGGGCAATTAGTCTTGGCAAATGCAGACTACATAATAGATTCAATATGTCGACAACTGCGTCATTTGGATCTTAACCCGCGTGTGCCAAATG TGCTGGCTTCATTGCTTTCTTACATTGGAGTAGCTCATAAGATACTGCCTCTGCTAGAGGAACCGATGCGCTCCGTTTCTCAGGAACTTGAGATTCTTGG TAGACATCAACACCCAGTTTTAACTATTCCCTTTTTGAAGGCTGTAGCAGAAATTGGTAAGGCGTCAAAACATGAGGCTTCTTCACTGCCCACTAATGCA GAATCTTATCTTATGCATGTCAAGTCCAAAGTATCTGATATGGGAAAAGGAAAAAAACTGGAATCCCATGAAAAGTCAACATCATATTATGACAATGATA TTGATATGTCTGACATGGAATCAGTAATGATATTGATTGCAGAGCAATGGGAGAATTTGCTTTTCAAGTTGAATGATTCCAAAAGATACAGACGAACTGT TGGATCAATTGCTGGTTCATGCTTAACAGCTGCGATCCCACTACTAGCTTCAATGAAGCAAGAGGAATGCTTGGTGGCCCTGAATATAGTTGAGGATGGC ATTGTGACACTGGGCAAAGTGGAAGAAGCATATAGGCATGAGAAAGAAACTAAAGAAGCAATTGAGGAAGTGATTCGATCATATTCATTATATCAGCTTC AAGATACTTTGGATGCGGCTGAGGAAGGGACTGATGAGAACAGGTTGCTCCCAGCAATGAATAAAATATGGCCATTCTTGGTTGCTTGTGTTCGTAATAA AAACCCAGTGGCTGTCAGGAGATGTTTAAGTGTGATATCCAGTGTAGTATTAATCTGTGGAGGAGATTTCTTTTCGCGCCGCTTCCACACTGATGGACCA CATTTCTGGAAACTTCTTACAACGTCTCCATTACAGAAGAAACCATTTTCAAAAGAAGACACAACTCCACTTCAACTTCCTTACAGAAGCGCTCCTACTT CCTCAGGGGACTCGATGTCTGAAATTTCAAACTTGAAGGTCCAGGTTGCAGTGCTCAACATGATTGCTCATTTGTCCCAGAATAAAAGGAGCACATCAGC ATTGCAAATAGTCCTCAAGAAGGTTAGTGGCCTTGTCGTGGGAATAGCTTTTAGTGGTGTTAAAGGGCTTCATGATGCGTCCATTAATGCACTACGCGGA CTTGCATCCATCGACTCTGACCTTATATGGCTTCTACTAGCCGATGTGTACTATGCTTTGAAGAAGAAAGACTTGCCTTCTCCACCCATCTCAGGTTTAC CCCAGATCTCTAAGATTTTGCCTCCACCTTTATCCCCTAAAGGGTATCTTTATGTACAGTATGGCGGACAAAGCTTTGGATTTGATATTGACTACCCTTC TGTAGAAACTGTGTTCAAAAAACTACTTTCCCAGATTTTTACTAACCAATTGTACATATAG
AA sequence Show only first row Show all	>Potri.007G067700.1 pacid=42766245 polypeptide=Potri.007G067700.1.p locus=Potri.007G067700 ID=Potri.007G067700.1.v4.1 annot-version=v4.1 MDAFNHLITTNLNHQNDDVNEEEEEEQQDIISSGVVFSQLKPYCLDLLQLLQNPNPTSFSSSIPSLVQFLHDSPPPSLQPFFDYVLFPLLLLLDAAVDSR KQNPKPHKISDRVAEGVVQCLEELLNKCYLVSIDQMVVLMKKLTYAAMLTENEASEEFREGVIKCFRALIEGLSSCGVEGCSCEEINGLPALVEAGDNRN VNSARDYLGGEGECLVSFLRSQSASAAVGHWFSLLLKAADNEVARGHRGSAKIRVEAFLTVRGLVAKIGTADALAFFLPGVVSQFAKVLHMSKTMISGAA GSVEAIDQAIRALAEYLMIVLEDDANVSSLDRSLCAGSGFNSNKKGSSIHSVLDELRQLPVSTQNQSKVAAENSVAEAVKSVTPASEFQSAKPGNEKGAL HVDRTRDWVEETSAHVDRLLSATFPHICLHPARKVRQGLLAVIRGLLSKCSCTLKQSKSMFLECLFVLVVDECGDISAPAQEFLEYLLSSSSKLNVQSDV AELFSRLVEKLPKVVFGNDESHALSHAQQLLVVIYYSGPKFLMDHLQSPVTAARFLDIFALSLSQNSVFTGALDKLMLARPSSIGYLHSIAELKSSSRFS SDYQSIVDVVPSDNPNSRDIHGKAIQNPSLSLQDNSELPRMPPWFGSQKLYQTLAGILRLVGLSLMTDSKSEGHMSVVSDIPLGHLRKLVSEIRDKEFTK ESWQSWYNRTGSGQLLRQASTAVCILNEMIFGLSDQAVDNLIRLFHTSELNREGVQAPDAKGADAQPNTVEHPERTRSIWKVSQERVARSHLNDCVGRIA HEYLSSEVWNLPIDQKSSLVQSDGEVEEITLHFFHDTAMLQQVIIDGIGIFSMCLGKDFASSWFLHSSLYLLLESLICSNIQVRQASDAVLHVLSCASGH PTVGQLVLANADYIIDSICRQLRHLDLNPRVPNVLASLLSYIGVAHKILPLLEEPMRSVSQELEILGRHQHPVLTIPFLKAVAEIGKASKHEASSLPTNA ESYLMHVKSKVSDMGKGKKLESHEKSTSYYDNDIDMSDMESVMILIAEQWENLLFKLNDSKRYRRTVGSIAGSCLTAAIPLLASMKQEECLVALNIVEDG IVTLGKVEEAYRHEKETKEAIEEVIRSYSLYQLQDTLDAAEEGTDENRLLPAMNKIWPFLVACVRNKNPVAVRRCLSVISSVVLICGGDFFSRRFHTDGP HFWKLLTTSPLQKKPFSKEDTTPLQLPYRSAPTSSGDSMSEISNLKVQVAVLNMIAHLSQNKRSTSALQIVLKKVSGLVVGIAFSGVKGLHDASINALRG LASIDSDLIWLLLADVYYALKKKDLPSPPISGLPQISKILPPPLSPKGYLYVQYGGQSFGFDIDYPSVETVFKKLLSQIFTNQLYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79190			ARM repeat superfamily protein...		Potri.007G067700 [exp]	0	1
AT5G42220			Ubiquitin-like superfamily pro...		Potri.002G013500 [exp]	1.41	0.9311
AT1G05790			lipase class 3 family protein ...		Potri.002G231501 [exp]	2.00	0.9042
AT1G21280			unknown protein		Potri.001G247404 [exp]	3.74	0.9257
AT1G65780			P-loop containing nucleoside t...		Potri.004G077800 [exp]	5.83	0.8513
AT3G61670			Protein of unknown function (D...		Potri.014G095700 [exp]	6.16	0.8678
					Potri.006G175050 [exp]	6.48	0.8903
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Potri.009G154300 [exp]	6.70	0.9162
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Potri.001G057800 [exp]	8.12	0.8514
AT1G43760			DNAse I-like superfamily prote...		Potri.006G175087 [exp]	8.36	0.8742
AT2G37840			Protein kinase superfamily pro...		Potri.006G092900 [exp]	9.48	0.8467

Compare expression of checked genes

Potri.007G067700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.