Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56130 1290 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 1266 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 1233 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56120 1231 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 714 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 694 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 692 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 687 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 660 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 650 / 0 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G082900 [exp] 1189 / 0 AT1G56140 1097 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G148000 [exp] 1176 / 0 AT1G56145 1063 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.004G135500 [exp] 738 / 0 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G385200 [exp] 716 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.003G026325 [exp] 705 / 0 AT1G53440 1195 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385400 [exp] 704 / 0 AT1G53440 1231 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385600 [exp] 703 / 0 AT1G53440 1202 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G106400 [exp] 699 / 0 AT1G53440 1268 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385300 [exp] 694 / 0 AT1G53440 1134 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031199 [exp] 1346 / 0 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031374 [exp] 695 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 694 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 649 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10015239 [exp] 647 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10041937 [exp] 640 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 607 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 565 / 0 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005418 [exp] 483 / 2e-156 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10042460 [exp] 370 / 4e-119 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.007G067900.1 pacid=42766009 polypeptide=Potri.007G067900.1.p locus=Potri.007G067900 ID=Potri.007G067900.1.v4.1 annot-version=v4.1 ATGATCAGACATCCGTTTCTTCTTCCCTTCTTAGCCCTTTCTTTTGTTTGCATCATTGGTTTGGCTGCCATAGCTCAAGCACAGAATCAAACTCAAGCTA CTACAGATCCTGATGAAGCTAGAACATTAAACTCGATCTTTCAACAATGGAGTATATCAGCCAACACCAATCAATGGAACACAAGTGGAGACGTATGCAG TGGAGCAGCCACTGGTGCATCTCCTACCATTGACAACAAAGATTTCAACCCCTTTATCAAATGTGACTGCACTTTCCTTAATGGCACCACTTGCCGTATT ACTGCCCTGAAAGTTTATGCAATAGATGTTATAGGATTAATTCCAGATGAGCTTTGGAGCTTGAAATACCTCACCAATTTGAATTTGGGTCAAAATTATT TGACAGGTAACCTGTCACCATCCATCGGTAATCTAACTCGGATGCAATACCTGACCATTGGCATTAATGCATTGTCTGGGGAGCTTCCTAAGGAACTTGG ACAGCTTACTGATTTAAGAGTATTTGGTTTTGGATCAAACAACTTCAATGGTTCTCTGCCATCTGCGCTTGGGAATTTAGTAAAACTGGAACAAATTTAT TTTGATAGTTCTGGAGTTAGTGGTGAGATTCCTACAACCTTTGCTAATTTGCAGAACTTGGCTACAGTGTGGGCTTCAGACAACGAACTCACAGGAAGGA TACCTGACTTCATAGGAAATTGGTCAAAGCTTACTTCCCTAAGATTTGAAGGTAATGCTTTTGAAGGTCCAATACCATCAGTCTTCTCCAACCTCACTAA TTTGACAGACTTAAGGATAAGCGATTTATCTGATGGAGGCTCCTCACTGGAATTTATTAAAAACATGAAGTCTCTAAGCATTTTGATGCTCAGGAATGAC AACATCTCTGCTTCAATTCCATCCTACATCGGAGAATTCCAGAGTTTGACACAGCTGGATTTGAGCTTCAACAATATCGAGGGACAGATTCCAGACTCGC TTTTCAATTTGAGCTCGCTCACTTACTTGTTTCTTGGAAACAATAAATTAAATGGCACCCTTCCGGCAACAAAAAGTTCAAGACTTCTCAATGTAGATGT GTCATACAATAATTTAGCAGGGGGATTTCCATCCTGGGTCAGCGAAACAAATTTAGAGCTTAATTTAGTTGCCAACAACTTCACAGTAGTTGCTTCAAAC CTCAGCGGTTTGCCGTCAGGGCTGAATTGTCTTCAACGCGACTTTCCTTGCAATCGAGGCTCTCCAATCTATTCACAATTTGGTATCAAGTGTGGTGGTC CAGAAATCACATCTTCAAACAGGGTTCTATTTGAGAGAGATAACACGAGTCTTGCTGCAGCATCATACTATGTGAGTGACACAAGCACTTTTGGTGTTAG TAATACTGGATATTTTTCAGGAAGCAACGACCCTCAGTACACGACATCTTCATCGTCACAATTTACAAATACTCTAGACTCTGAGTTGTTCCAGACATCT CGACTCTCTGCTTCATCACTAAGGTACTATGGGTTGGGGCTTGAGAATGGTAACTACACCATTACCATTCAGTTTACAGAATCAGTTATTTTTCAAGGAA GCACATGGAAGAGTCTTGGAAGGCGTGTTTTCGATGTTTATATCCAGGGAAGTCGTGTTTTGAAGGATTTTGACATACAAAAGGCAGCAGGCGGAATCAT GAATCAAGCTGTACAGAGGGAATTTAAGGTTCAGGTAACAGAAAATTACCTTGATATCCATTTCTTTTGGGCTGGAAAGGGGACTTGTTGCATTCCTGCT CAAGGTACATATGGACCTTCTGTTTCAGCGATCAATGCTATCCCAGATTTCACACCCACTGTTAGTAACAAGCTACCAAGTGAGAAGAAGAAGAAGAATA GGACTGGTTTGATTGCGGGGATTGTTGTTGGTGTTGGAATAGTAGGCTTTCTACTTGTTTTTGCTGTATTCTTTGTTCGAAGAAGAAAAGGGCAAAGCAA CAATGATTTTGAAGAGTTCCTAGGGATCGATGCTAGACCGTACACTTTCAGTTATGGTGAACTGAAGACTGCTACAGAAGATTTTAGTTCTGCTAATAAG CTTGGAGAGGGAGGGTTTGGACCAGTTTTCAAGGGAAAACTTAATGATGGGAGAGTGATTGCTGTTAAGCAACTGTCCATAGCATCTCACCAAGGAAAGA CTCAGTTTATAGCAGAGATTGCTACTATATCTGCTGTGCAACACCGTAATCTCGTGAAATTGTATGGATGCTGCATCGAGGGAGCAAATCGACTCCTTGT ATACGAGTATCTCGAGAACAAGAGTCTTGATCAAGCAGTATTTGGAGAGCAAAGTTTGAATCTTGACTGGCCAACACGCTATGATATATGCTTGGGAGTA GCGAGAGGTCTAGCTTATCTTCATGAGGAATCAAGGATTCGAATTGTACACAGAGACGTGAAGGCCAGTAACATTCTGCTTGATTTTAATCTCATTCCAA AAATTTCAGATTTTGGTTTAGCCAAACTTTACGATGATAAGAAGACCCATATAAGCACCCGTGTTGCAGGAACAATTGGATATCTTGCACCGGAGTATGC AATGCGTGGACACCTGACAGAGAAGGCCGATGTATTCGCCTTTGGAGTTGTGGCTCTGGAAATCATAAGTGGAAGACCAAATTCAGACACAAGCTTGGAA ACGGAAAAGATTTATCTTCTCGAATGGGCCTGGGACCTCCATGAAAACAACCGTCAAGTTGAGCTAGTAGACTCTAGACTATCTGAATTTAACGAGGAAG AAGTGAACCGTCTGATAGGAGTTGCTCTTTTATGTACTCAAACTGCACCTACGCTACGGCCATCAATGTCACGGGTCATTGCTATGCTATCTGGTGATAT TGAAGTGAACAGTGTAACTTCGAAACCGGGATACTTGACTGACTGGAAATTTGATGATACAAGCACCTATATGAGTGATGATGCAACGAGAGCATCAGAT ACTAGCCACTACAATTCATCCACAAGGACAAGCCTCGTGAACAACCCAAAGGATTTGTCACCAACCGCCACCGATCCCATACTCCGTGACACTATCGGAC AGGGAAGATAA
AA sequence Show only first row Show all	>Potri.007G067900.1 pacid=42766009 polypeptide=Potri.007G067900.1.p locus=Potri.007G067900 ID=Potri.007G067900.1.v4.1 annot-version=v4.1 MIRHPFLLPFLALSFVCIIGLAAIAQAQNQTQATTDPDEARTLNSIFQQWSISANTNQWNTSGDVCSGAATGASPTIDNKDFNPFIKCDCTFLNGTTCRI TALKVYAIDVIGLIPDELWSLKYLTNLNLGQNYLTGNLSPSIGNLTRMQYLTIGINALSGELPKELGQLTDLRVFGFGSNNFNGSLPSALGNLVKLEQIY FDSSGVSGEIPTTFANLQNLATVWASDNELTGRIPDFIGNWSKLTSLRFEGNAFEGPIPSVFSNLTNLTDLRISDLSDGGSSLEFIKNMKSLSILMLRND NISASIPSYIGEFQSLTQLDLSFNNIEGQIPDSLFNLSSLTYLFLGNNKLNGTLPATKSSRLLNVDVSYNNLAGGFPSWVSETNLELNLVANNFTVVASN LSGLPSGLNCLQRDFPCNRGSPIYSQFGIKCGGPEITSSNRVLFERDNTSLAAASYYVSDTSTFGVSNTGYFSGSNDPQYTTSSSSQFTNTLDSELFQTS RLSASSLRYYGLGLENGNYTITIQFTESVIFQGSTWKSLGRRVFDVYIQGSRVLKDFDIQKAAGGIMNQAVQREFKVQVTENYLDIHFFWAGKGTCCIPA QGTYGPSVSAINAIPDFTPTVSNKLPSEKKKKNRTGLIAGIVVGVGIVGFLLVFAVFFVRRRKGQSNNDFEEFLGIDARPYTFSYGELKTATEDFSSANK LGEGGFGPVFKGKLNDGRVIAVKQLSIASHQGKTQFIAEIATISAVQHRNLVKLYGCCIEGANRLLVYEYLENKSLDQAVFGEQSLNLDWPTRYDICLGV ARGLAYLHEESRIRIVHRDVKASNILLDFNLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFAFGVVALEIISGRPNSDTSLE TEKIYLLEWAWDLHENNRQVELVDSRLSEFNEEEVNRLIGVALLCTQTAPTLRPSMSRVIAMLSGDIEVNSVTSKPGYLTDWKFDDTSTYMSDDATRASD TSHYNSSTRTSLVNNPKDLSPTATDPILRDTIGQGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56130			Leucine-rich repeat transmembr...		Potri.007G067900 [exp]	0	1
AT1G18390			Protein kinase superfamily pro...		Potri.010G145400 [exp]	3.31	0.9530
AT5G01950			Leucine-rich repeat protein ki...		Potri.006G111100 [exp]	8.48	0.9273
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125751 [exp]	10.09	0.9015
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.002G188900 [exp]	10.72	0.9450
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Potri.001G069799 [exp]	10.95	0.9480
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.007G098600 [exp]	12.28	0.8861
					Potri.001G019985 [exp]	13.41	0.9464
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Potri.008G079500 [exp]	16.97	0.9445
AT1G68940			Armadillo/beta-catenin-like re...		Potri.010G136500 [exp]	22.13	0.9446
AT3G62700		ATMRP10, ABCC14	ATP-binding cassette C14, mult...		Potri.014G130500 [exp]	22.36	0.9439

Compare expression of checked genes

Potri.007G067900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.