Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22470 300 / 9e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 290 / 7e-92 RPF2 rna processing factor 2 (.1) AT1G62930 286 / 1e-90 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 286 / 2e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 285 / 4e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 284 / 1e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 284 / 1e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 282 / 4e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 281 / 3e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 281 / 1e-87 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G130600 [exp] 515 / 0 AT1G12700 330 / 3e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.014G117600 [exp] 468 / 2e-163 AT1G12700 330 / 1e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G047400 [exp] 361 / 5e-121 AT1G63080 341 / 1e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 347 / 3e-113 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271400 [exp] 338 / 5e-111 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074700 [exp] 335 / 2e-110 AT1G62930 481 / 1e-164 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 335 / 7e-110 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G038300 [exp] 332 / 1e-108 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G021200 [exp] 330 / 1e-107 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014245 [exp] 299 / 9e-96 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014242 [exp] 285 / 2e-92 AT1G62930 256 / 5e-78 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029737 [exp] 286 / 8e-90 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014244 [exp] 281 / 6e-89 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10042768 [exp] 282 / 4e-88 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10024962 [exp] 272 / 4e-86 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008593 [exp] 273 / 6e-86 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10036865 [exp] 270 / 9e-86 AT1G12700 273 / 1e-83 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014247 [exp] 272 / 2e-85 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022861 [exp] 272 / 2e-85 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.007G068400.3 pacid=42766494 polypeptide=Potri.007G068400.3.p locus=Potri.007G068400 ID=Potri.007G068400.3.v4.1 annot-version=v4.1 ATGGGTATGGGCTTCTTCTCTTCTTTCAGTAGCAGCCGTAGGAAGGGCTATTTTGGTAACCTTGATAATGCTTTAGCTTCATTTAATCGCATGCTTGATA GGAATCCTCAGCCTCCTATTATCGAGTTTAATCGGTTATTATCTTCAGTTGTGAGGATGAAAAAATATGAGACAGTTGTTTCTTTGTTCAAAGAAATGGA ATTTAGAGGAATCAAATACAATGTCTGTACTCTTAGCATTTTGATTAATTGCTTCTGCTTCTTACATCATGTGGATTATGGGTTCTCTGTTTTTGGAAAG ACCCTTAAACGTGGTTTTAAGCCTGATGTTGTAATATTTACTACCTTGATAGATGGGGTCTGTAGGATTGGGAAAACCGAGCTGGCTGCTGGGTTGCTGA AGGAAATGGGACTTGTAGGTTGTGTTCCAGATGTTGTTACTTGCAATTCGCTAATGCGTGGATATTGTTCGCAAGGGAAAATCGATAAGGTTAGAAAAAT ATTTCATTTGATGGTGAGTAAAGGTCTTAAACCTGATGTTTATAGTTACAGTATCTTCATCAATGGGTACTGCAAGGTTGAAAAAATAGATGAGGCTATG GAACTTTTTGATGAAATGTCTCATAGAGGTGTGGTGCCTAATGCGGTTACTTATAATACTCTGATAAAGGCCTTGTGTCAAGCTTTGAGACCTCGGGATG CACAAGTGCTTTTCAGGAAGATGTGTGCTTGTGGCCTTTCTCCTGATATATTAGCTTACTCTACTTTGCTTGATGGGTTCTGTAAACAAGGGAATCTTGA TGAGATGTTGGTGCTATTTCAAGAGATGCAAAGGCGTCTTGTGAAGCCTGACTTGGTAGTCTACACCATCATAATTAATGGAATGTGCAGGTCCAGAAAG GTTAAAGATGCAAAGGAAGTACTTTCTCGACTCATTGTTGAAGGGCTTAAGCCTGATGTTCATACCTACACTGCATTAGTTGATGGGCTTTGCAGAGAAG GATCAATAATTGAAGCACTGAGACTTTTTAGAAAAATGGAAGAGGATGGCTGCATGCCAGGAAGTTGCTCTTATAATGTCCTTCTCCAAGGATGTCTCCA ACACAATGATACATCAACAGTAGTGCAACTTATCCATGAAATGGCTGATCGAGGATTCTATGCAGATGCTGTCACGAGAACCTTTCTGAAAGATTTTCTA CCTGGCAACGACAGTCCTGCAATAAAACAACTGCTAGGACTCTTTGAAGGGCATCAAGGTGTGAAGGTGAAGTAG
AA sequence Show only first row Show all	>Potri.007G068400.3 pacid=42766494 polypeptide=Potri.007G068400.3.p locus=Potri.007G068400 ID=Potri.007G068400.3.v4.1 annot-version=v4.1 MGMGFFSSFSSSRRKGYFGNLDNALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILINCFCFLHHVDYGFSVFGK TLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAM ELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRK VKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAVTRTFLKDFL PGNDSPAIKQLLGLFEGHQGVKVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.007G068400 [exp]	0	1
AT3G58520			Ubiquitin carboxyl-terminal hy...		Potri.006G195900 [exp]	4.89	0.7462
AT4G10130			DNAJ heat shock N-terminal dom...		Potri.014G032000 [exp]	8.36	0.7221
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Potri.010G162600 [exp]	11.18	0.7527
					Potri.001G371000 [exp]	12.88	0.7763
AT5G08170		ATAIH, EMB1873	EMBRYO DEFECTIVE 1873, AGMATIN...		Potri.015G055300 [exp]	15.74	0.7590
AT3G12180			Cornichon family protein (.1)		Potri.006G057300 [exp]	18.73	0.6773
AT1G65032			unknown protein		Potri.005G094100 [exp]	19.62	0.7404
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Potri.010G031900 [exp]	21.00	0.7288	ECR1.2
AT1G78910			Pseudouridine synthase family ...		Potri.004G228200 [exp]	21.16	0.6862
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Potri.010G077300 [exp]	21.54	0.7292

Compare expression of checked genes

Potri.007G068400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.