Plant FIBer expression Database

Potri.007G068500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79200 118 / 2e-34 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G095700
[exp]
142 / 7e-44 AT1G79200 112 / 5e-32 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G068500.1 pacid=42766513 polypeptide=Potri.007G068500.1.p locus=Potri.007G068500 ID=Potri.007G068500.1.v4.1 annot-version=v4.1
ATGGGAATCGACAGGAAGGGGAAGGAGAAGAAGAGCAGGAAGAGAACCTCCTCTCTGTCGTCATCTGAAGATGAAGGAAGAAGAAGGAAAAGACGGAGAA
GTGATGATGAAAGGAGAAATAGAAAGAGTGATAAGAAAGAGAAGAGAAAGGACAAGAAGTCTCATAGGCACCACTCTGATAAAGAGAAGAAGTCTAAGGA
TAAGCACAAAAGTAAACGACACGAAGGGGATCACCACTCGAAATCTGAGTTTCAAGAGCTGTCTAATGACGACTACTTCTCCAAGAATAATGAGTTCGCT
ACATGGCTAAAAGAGAAGAAGAAAATGTTTTTCTCTGATCTTTCGTCTGAGTCTGCACGAGAATTGTTTTCAGTTTTTGTCAAAGACTGGAACTCTCAGA
AGCTTGAATCTCGATATTATGAGGGCATTTCAAGTGCACCTCGGAGTGCCCATAACTGGGCATTCAAGCGTTAG
AA sequence
>Potri.007G068500.1 pacid=42766513 polypeptide=Potri.007G068500.1.p locus=Potri.007G068500 ID=Potri.007G068500.1.v4.1 annot-version=v4.1
MGIDRKGKEKKSRKRTSSLSSSEDEGRRRKRRRSDDERRNRKSDKKEKRKDKKSHRHHSDKEKKSKDKHKSKRHEGDHHSKSEFQELSNDDYFSKNNEFA
TWLKEKKKMFFSDLSSESARELFSVFVKDWNSQKLESRYYEGISSAPRSAHNWAFKR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G79200 unknown protein Potri.007G068500
[exp]
0 1
AT4G01590 unknown protein Potri.003G047600
[exp]
1.73 0.7794
AT1G75580 SAUR-like auxin-responsive pro... Potri.002G024300
[exp]
8.00 0.6838
AT1G76060 EMB1793 EMBRYO DEFECTIVE 1793, LYR fam... Potri.002G016600
[exp]
9.38 0.7592 Pt-EMB1793.1
AT3G23580 RNR2A ribonucleotide reductase 2A (.... Potri.008G201500
[exp]
11.48 0.6837 RNR2.1
AT2G04520 Nucleic acid-binding, OB-fold-... Potri.014G160900
[exp]
11.66 0.7458
AT1G79390 unknown protein Potri.008G081400
[exp]
17.14 0.7000
AT1G48300 unknown protein Potri.010G003200
[exp]
17.91 0.7479
AT3G62450 unknown protein Potri.005G071700
[exp]
17.94 0.7107
AT3G58090 Disease resistance-responsive ... Potri.006G216000
[exp]
25.92 0.7088
AT1G04290 Thioesterase superfamily prote... Potri.004G134066
[exp]
28.98 0.7216

Potri.007G068500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.