Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16480 1183 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G33170 559 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 557 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 551 / 2e-179 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 492 / 5e-159 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 486 / 5e-157 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 477 / 4e-154 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 472 / 4e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 472 / 5e-150 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 468 / 6e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 588 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 586 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G129100 [exp] 570 / 0 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 567 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 529 / 5e-173 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 528 / 1e-171 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 501 / 5e-163 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 499 / 4e-162 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 503 / 8e-162 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013578 [exp] 1175 / 0 AT1G16480 1036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033685 [exp] 1099 / 0 AT1G16480 962 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013991 [exp] 560 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 553 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 545 / 9e-177 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017082 [exp] 521 / 5e-169 AT1G16480 507 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10001220 [exp] 513 / 1e-166 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 501 / 3e-162 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 496 / 2e-160 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 494 / 7e-159 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.007G068600.2 pacid=42766179 polypeptide=Potri.007G068600.2.p locus=Potri.007G068600 ID=Potri.007G068600.2.v4.1 annot-version=v4.1 ATGTGCTGCAGAAAACTCTCAACTTTCAAACCCAAGCCTCCACTAATACCCCCCATTTTTTCCCGCCGGTACTCCTTAAACCCAAAATCCATCTCAAAAA TTTCCTTAGAATGCCGAATCATAGAAGAAGAACCCACAAACATGAACACAAACAGACATTATGGGACATGTGTTTCCCTCTTAAACCACCCAAACCCCGA AATCTCCTGTTTTTATCAGAAGGGTTTCTCTCAAATCACCAAAGAAGTAACTGGAAAGGCTTTACATGCACTTTTCATTAAGGGATTAGTCAATTTAACC GTGTTTTACAGTAACACTCTGATTAATATGTACTCAAAGTTTGGCCATATAGGTTTTTCTCGTTACCTGTTCGATAAAATGTCTGAAAGAAATGATGCTT CTTGGAATAATATGATGTCGGGGTTTGTTCGTGCGGGCTTTTACAGGGAATCGATGCGATTCTTTAATGAAATGAGGGATTTTGGGGTTAAGCCAAGTGG GATTGCTGTTGCTAGTTTGGTAACGGCCTGTGAGAGGTCAGAATGGATGCTTATTGAAGGGGTTCAAGTTCATGGCTTTATTGTTAAAGTTGGTCTTCTG AGTGATGTTTTTGTTGGCACTTCGCTTGTGCATTTATATGGAAACTATGGATTGGCTGCAGATGCAATGAAGGTCTTTCAGGAGATGATTTATAAGAACG TAGTTTCTTGGACTGCATTGATGGTTGCTTATGTGGACTATGGAGAACCAAGCATGGTAATGAATATATATCGGCGAATGAGGTCTGAAGGAATGAGTTG CAATGACAACACAATGTCTTCTGTGATTAGTACTTGTGTGTCACTTGAAAATGAATTGTTGGGTTATCAAGTTCTTGGACATGTAATAAAGTATGGATTA GAAACTAACGTTTCAGTTGCAAACTCTCTTATATCAATGTTTGGTTATTTTGGTAGCGTGGAAGAAGCTTGCTATGTTTTTAGTGGCATGGATGAACATG ACACGATATCATGGAACTCAATGATTGCGGCATACATACGTAATGGTCTTTGTAAGGAATCATTAAGATGTTTTTCTTGGATGTTCCGTGTTCACAAGGA AATAAATTCTACTACACTTTCAACTATGTTAGCAGGCTGTGGTTCTGTGGATAACTTGAAGTGGGGCAGAGGAATTCATTCTTTGGTGTTGAAATTTGGG TGGAACTCAAATGTTTGTGCATCCAATACTCTAATAACCATGTACTCTGATGCTGGAAGATGTGAAGATGCAGAATTGGTATTCCAAGGGATGGTGGAGA AGGATATGATTTCATGGAATTCCATGATGGCTTGTTATGCTCAGGATGGGAACTGCCTGGATGCCCTGAAACTTCTTGCTACAATGTTTTACATGAGAAG AGGAGCGAATTATGTGACCTTTACAAGTGCATTGGCTGCATGTTCAGATCCTGAATTTGCTACTGAAGGCAAGATTCTTCATGCCCTTGTAATTCATATT GGTCTTCATGAAAATGTGATTGTTGGCAATGCATTGGTTACACTGTATGCAAAGTCTGGTCTAATGATTGAAGCAAAAAAGGTATTTCAAACAATGCCTA AGCGAGATGGAGTAACTTGGAATGCTCTCATTGGTGGTCATGCGGACAGTGAAGAACCAGATGAGGCATTAAAAGCATTCAAATTGATGAGAGAAGAAGG TGTACCTATAAACTATATTACAATTTCAAATGTTCTTGGTGCTTGCTTGGCTCCTAATGATCTATTGGAACACGGGATGCCCATCCATGCTTTTATAATT CTGACAGGATTTCAGTCTGATGAATATGTGCAGAATTCACTTATAACAATGTATGCTAAGTGTGGTGATCTTAATTCGAGCAACAACATATTTGACAGGT TAACTTATAAGAATGCTAGTGCGTGGAATGCTATGATGGCAGCAAATGCTCATCATGGTCATATGGAAGAGGCTCTGAAATTCCTTCTGGAGATGAGGCG TGCCGGAGTAAATGTGGACGAGTTTAGTTTTTCCGAATGCCTTGCTGCTGCTGCCAAGCTGGCAATATTGGAGGAAGGCCAGCAGCTTCATGGTTTGGCA GTCAAACTTGGTTGTGACTCAAATCCTTTTGTTGCAAGTGCCACAATGGATATGTATGGAAAATGTGGGGAAATTGATGATGTGTTAAGAATAATTCCTC GACCAATCAACCGGTCACGGTTATCATGGAATATATTGACGTCATCTTTTTCCAGACATGGGTTTTTTGAGAAGGCTAAGGAAACTTTTCATGAGATGAT AAATCTTGGAGTAAAACCAGATCATGTTACCTTTGTTTCTCTTCTTTCTGCCTGCAGTCATGGGGGTATGGTGGAGGAGGGTCTGGCGTACTATGATTCA ATGATAAAAGAGTTTGGTATTCCAGCAAAAATTGGGCATTGCGTATGCATTATTGATCTTCTTGGACGATCAGGAAGGTTTGCCGAGGCTGAAACTTTCA TTAAGGAAATGCCAGTTTCACCAACTGATCATGTTTGGCGGAGTTTATTGGCAGCATGTAAAACCCATGGCAATCTGGAGCTTGGAAGAAAAGCTGTAGA AAATCTTTTGAAGTTGGACCCCTCGGATGATTCTGCTTATGTTCTCTATTCAAATATTTGTGCAACCACTGGGAAATGGGAAGATGTAGAGAAAATCAGG AGGCAAATGGGATTAAATAAAATAAAGAAGAAACCTGCGTGCAGTTGGGTCAAATTGAAGAACAAGTTGAGTTTATTTGGAATGGGAGACCATTCCCATC CACAGGCTAGTGAAATATATGCAAAGTTGGAAGAACTTAAGAAGATGATTAAAGAAGCAGGCTATATCCCTGATATAAGCTATGCCTTGCAAGATACAGA TGAAGAACAAAAGGAGCACAATCTTTGGAACCATAGCGAGAGACTCGCCTTGGCATATGGCTTGATCAGTTCTCCTGAAGGTTCAACTCTTAAAATTTTC AAGAACCTTCGTGTTTGTGGTGATTGTCATTCTGTATATAAGTTTGCTAGTGGAATTCTTGGGCGGAAAATCGTATTACGAGACCCTTATCGGTTTCATC AGTTTAGCGGTGGCCAATGTTCATGTACTGACTATTGGTAA
AA sequence Show only first row Show all	>Potri.007G068600.2 pacid=42766179 polypeptide=Potri.007G068600.2.p locus=Potri.007G068600 ID=Potri.007G068600.2.v4.1 annot-version=v4.1 MCCRKLSTFKPKPPLIPPIFSRRYSLNPKSISKISLECRIIEEEPTNMNTNRHYGTCVSLLNHPNPEISCFYQKGFSQITKEVTGKALHALFIKGLVNLT VFYSNTLINMYSKFGHIGFSRYLFDKMSERNDASWNNMMSGFVRAGFYRESMRFFNEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKVGLL SDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYRRMRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGL ETNVSVANSLISMFGYFGSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAGCGSVDNLKWGRGIHSLVLKFG WNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVIHI GLHENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLMREEGVPINYITISNVLGACLAPNDLLEHGMPIHAFII LTGFQSDEYVQNSLITMYAKCGDLNSSNNIFDRLTYKNASAWNAMMAANAHHGHMEEALKFLLEMRRAGVNVDEFSFSECLAAAAKLAILEEGQQLHGLA VKLGCDSNPFVASATMDMYGKCGEIDDVLRIIPRPINRSRLSWNILTSSFSRHGFFEKAKETFHEMINLGVKPDHVTFVSLLSACSHGGMVEEGLAYYDS MIKEFGIPAKIGHCVCIIDLLGRSGRFAEAETFIKEMPVSPTDHVWRSLLAACKTHGNLELGRKAVENLLKLDPSDDSAYVLYSNICATTGKWEDVEKIR RQMGLNKIKKKPACSWVKLKNKLSLFGMGDHSHPQASEIYAKLEELKKMIKEAGYIPDISYALQDTDEEQKEHNLWNHSERLALAYGLISSPEGSTLKIF KNLRVCGDCHSVYKFASGILGRKIVLRDPYRFHQFSGGQCSCTDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	0	1
AT2G03880		REME1	required for efficiency of mit...		Potri.004G208000 [exp]	1.41	0.9469
AT5G06540			Pentatricopeptide repeat (PPR)...		Potri.016G065500 [exp]	1.73	0.9465
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	2.00	0.9482
AT1G23450			Tetratricopeptide repeat (TPR)...		Potri.008G212000 [exp]	2.82	0.9388
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.018G085800 [exp]	3.46	0.9453
AT3G50420			Pentatricopeptide repeat (PPR)...		Potri.005G131800 [exp]	3.74	0.9290
AT5G40410			Tetratricopeptide repeat (TPR)...		Potri.002G014800 [exp]	4.47	0.9374
AT5G46100			Pentatricopeptide repeat (PPR)...		Potri.011G057900 [exp]	4.89	0.9423
AT1G50840		PolIA, POLGAMMA...	polymerase I A, polymerase gam...		Potri.011G136900 [exp]	5.91	0.9174
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	5.91	0.9409

Compare expression of checked genes

Potri.007G068600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.