Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60990 656 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G16280 343 / 9e-114 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT4G16630 272 / 3e-83 DEA(D/H)-box RNA helicase family protein (.1) AT5G65900 259 / 2e-79 DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 252 / 1e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G33730 251 / 1e-75 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 233 / 9e-71 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 230 / 6e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G77030 232 / 6e-68 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) AT5G51280 224 / 1e-66 DEAD-box protein abstrakt, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G249100 [exp] 669 / 0 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 595 / 0 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G084700 [exp] 350 / 4e-116 AT1G16280 616 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Potri.005G241300 [exp] 262 / 1e-79 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G185900 [exp] 248 / 4e-74 AT1G77030 1106 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Potri.001G250700 [exp] 243 / 8e-74 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G045800 [exp] 243 / 1e-72 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G045300 [exp] 239 / 3e-72 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 235 / 8e-72 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031761 [exp] 711 / 0 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031182 [exp] 708 / 0 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10006326 [exp] 377 / 2e-125 AT1G16280 673 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10029596 [exp] 376 / 7e-125 AT1G16280 674 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10042754 [exp] 267 / 4e-81 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10009616 [exp] 248 / 2e-75 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027240 [exp] 246 / 7e-75 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015187 [exp] 247 / 3e-74 AT2G33730 1083 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 243 / 1e-73 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028644 [exp] 243 / 4e-72 AT1G77030 1057 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G068800.2 pacid=42766194 polypeptide=Potri.007G068800.2.p locus=Potri.007G068800 ID=Potri.007G068800.2.v4.1 annot-version=v4.1 ATGGCAGAGGTGAAAGAAGAAGTGAAGAGTTTTAAGGACTTAGGAATATGTGATCAATTGGAGAAAGAAGAAGTGAAGAGTTTTAAGGACTTAGGAATAT GTGATCAATTGGTTGAAGCATGTGATAGTTTGGGTTGGAAAAACCCAACAAAGATTCAAGTTGAAGCTGTTCCTCATGCCCTTGAAGGCAAAGACTTGAT TGGTTTAGCACAGACTGGTTCTGGTAAAACTGGAGCTTTTGCTTTACCTATATTACAAGCTTTACTTGAATCTTCACAGAAATCTGTTCAACCTTTCTTT GCCTGCGTTCTCTCCCCTACAAGGGAGTTGGCAATTCAGATTGCCGAGCAATTTGAAGCTTTAGGATCTGGGATTGGTTTGAGATGTGGAGTGCTTGTCG GAGGTGTGGATATAGTGCAACAGACTCTTATCCTTGCCAAAAGACCACATATTGTTGTTGCAACACCTGGACGCCTGTTGGATCATCTGTCAAATACCAA AGGTTTTTCTCTTCGTACATTGAAGTATTTGGTCCTAGACGAGGCAGACAGGTTACTGAATGAAGAGTTTGAGAAATCCCTAGATGAAATTTTAAATGTT ATTCCACGGGATCGAAAAACATATCTGTTTTCTGCAACCATGACAAAAAAGGTGAAGAAGCTCCAAAGAGCTTGTTTGAGAAATCCTGTTAAGATTGAAG CAGCATCAAAATATTCCACTGTTGACACTCTGAAGCAGCAATATCGTTTTGTTCCTTCTAAACACAAGGATTGCTATCTTGTATACATTCTGACTGAAAT GTCCAATAGTACTGCCATGGTTTTCACTCGAACATGCGATGCAACTAGCTTTTTGGCTTTGGTTCTTCGAAATCTTGGTCTAAGGGCCATCCCTATTAAT GGTCACATGAGTCAGCCAAAGAGACTTGGAGCCTTAAACAAGTTCAAGGCAAGGGAGTGCAATGTTCTAATATGCACTGATGTGGCAAGTAGGGGACTTG ACATTCCATCTGTTGATATGGTTATAAACTACGATGTCCCCTCAAACTCTAAGGATTATATTCATCGCGTTGGCAGAACTGCTCGTGCAGGGCGATCTGG GGTTGCAATCTCACTAGTAAATCAGTATGAACTGGAGTGGTATCTACAGATAGAGAATCTTATAGGTAAAAAACTGCCTGAGTTTCCCGCTCAAGAGGAG GAGGTCTTGATGTTGTTGGATCGTGTTATTGATGCCAAAAGAATTTCTCACACGAAACTTAAAGAAGGTGGGGGTAAGAAGAGGAGGGGTGGAGATGACG AGGAAGAAGACGATGTTGAAAAGTATTTAGGCTTCAAGCACAAGAAGTCGAAGAAGTTTAAGAAAGGAGACAAGCAACACGTCAAGTGA
AA sequence Show only first row Show all	>Potri.007G068800.2 pacid=42766194 polypeptide=Potri.007G068800.2.p locus=Potri.007G068800 ID=Potri.007G068800.2.v4.1 annot-version=v4.1 MAEVKEEVKSFKDLGICDQLEKEEVKSFKDLGICDQLVEACDSLGWKNPTKIQVEAVPHALEGKDLIGLAQTGSGKTGAFALPILQALLESSQKSVQPFF ACVLSPTRELAIQIAEQFEALGSGIGLRCGVLVGGVDIVQQTLILAKRPHIVVATPGRLLDHLSNTKGFSLRTLKYLVLDEADRLLNEEFEKSLDEILNV IPRDRKTYLFSATMTKKVKKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVPSKHKDCYLVYILTEMSNSTAMVFTRTCDATSFLALVLRNLGLRAIPIN GHMSQPKRLGALNKFKARECNVLICTDVASRGLDIPSVDMVINYDVPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYLQIENLIGKKLPEFPAQEE EVLMLLDRVIDAKRISHTKLKEGGGKKRRGGDDEEEDDVEKYLGFKHKKSKKFKKGDKQHVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60990			DEA(D/H)-box RNA helicase fami...		Potri.007G068800 [exp]	0	1
AT3G21540			transducin family protein / WD...		Potri.006G121100 [exp]	2.23	0.8723
AT2G35720		OWL1	ORIENTATION UNDER VERY LOW FLU...		Potri.001G158200 [exp]	2.44	0.8475
AT5G14050			Transducin/WD40 repeat-like su...		Potri.005G218600 [exp]	2.82	0.8362
AT4G26600			S-adenosyl-L-methionine-depend...		Potri.001G369600 [exp]	3.16	0.8715
AT3G16810		APUM24	pumilio 24 (.1)		Potri.010G005600 [exp]	3.87	0.8711
AT1G15420			unknown protein		Potri.001G173300 [exp]	3.87	0.8491
AT4G28200			unknown protein		Potri.007G040000 [exp]	7.74	0.8501
AT3G11830			TCP-1/cpn60 chaperonin family ...		Potri.004G195300 [exp]	8.48	0.8025
AT5G07900			Mitochondrial transcription te...		Potri.012G046800 [exp]	8.94	0.7776
AT1G63660			GMP synthase (glutamine-hydrol...		Potri.003G128200 [exp]	10.48	0.8069

Compare expression of checked genes

Potri.007G068800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.