Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20730 562 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15130 384 / 3e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 387 / 2e-124 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 370 / 8e-120 MEF22 mitochondrial editing factor 22 (.1) AT1G11290 359 / 2e-114 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 352 / 4e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39350 347 / 2e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 350 / 6e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 347 / 2e-109 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G13230 344 / 2e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G244500 [exp] 412 / 3e-136 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 387 / 4e-125 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 384 / 5e-124 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 385 / 1e-123 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 376 / 1e-121 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G111300 [exp] 373 / 9e-119 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 372 / 7e-118 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 366 / 5e-117 AT3G22690 582 / 0.0 unknown protein Potri.005G151200 [exp] 364 / 1e-116 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027534 [exp] 674 / 0 AT3G20730 474 / 2e-162 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 397 / 3e-129 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030124 [exp] 375 / 3e-124 AT3G15130 613 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 379 / 5e-122 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 376 / 3e-120 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013176 [exp] 369 / 6e-120 AT5G39350 621 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008136 [exp] 364 / 4e-118 AT5G39350 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 369 / 9e-118 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006123 [exp] 355 / 3e-114 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 359 / 5e-113 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.007G068900.2 pacid=42765549 polypeptide=Potri.007G068900.2.p locus=Potri.007G068900 ID=Potri.007G068900.2.v4.1 annot-version=v4.1 ATGAGAAGTCCAAACACACAAACGGTTGCCTACCTTTCCAAAGCGCACCCAAAATTCAATGCCTCTAACCCATCCCAGTTAGACTACTCTTCCTACATGA AAAGCTTACAACTTTGCATTGAAACAAAAGCTAAAAAACCAGGCCATTTGATTCACAACCAAATTTTAACAAACGGGTTTGCTTCAAATATTCACCTAAG CACCAAATTAATCATATTTTACTCAAAACTTGGTGATACAGTCAGTGCACGAAAGGTGTTCGATAGAATGCCTGAAAGAACTGTTGTGTCATGGTCTGCT CAGATTTCTGGGTACTCACAAAATGGGTGTTACCAAGATGCATTATTGGTGTTTTTAGACATGCTTAGAGCAGGTTTTAAGGCCAACCAGTTTACTTATG GGAGCGTGTTACGCGCATGTACTGGTTTGAGGTGTTTGCAGAGAGGGATGCAAATACAAGGGTGTCTCGAGAAGAGTAGATTTGCTAGTAATCTGATCGT GCAAAGCGCTTTGCTTGATTTGCACTCCAAGTGTGGAAAGATGGAGGATGCTTGTTACTTGTTTGGAATGATGGAAGAAAGGGATGTTGTTTCTTGGAAT GCAATAATTGGCGCATATGCTGTTCAGGGTTTTTCTGGTGATTCATTTCGAATGTTTCGTTCGATGATGCAAGAAGGTATGAGCCCTGATCTTTTCACCT TTGGGAGTGTTTTAAAGGCGTCCGGTATGGCTAGTGATGTCATCAGAGTCTGCCAAATACATCAATTGATCATCCAACTAGGTTATGGATCACATATTTC TTTGAGTGGTTCGCTAATTGATGCGTATGCAAAATGTGAAAGCTTAGCAAGTGCTCATTGCTTATATAAAAGTATGCCAATGAAAGATATGATATCTTGC ACGGCACTGATGACTGGATATGCACGGGACAGTAACTACAGTAGCAAGGCCCTGGATTTGTTCAAAGAAATACAGCAGATGCACATGAAGATAGATGATG TTATATTATGCTCCATGTTTAATATATGTGCTAACATATCATCTTTGAGTGTGGGAAGACAAATCCATGCTCTTGCCTTAAAATGTAAACCCACTTATGA TGTGGCCATGGGAAATGCTCTTATTGATATGTATGCAAAATCTGGAGAGATTAAAGATGCTAACCGTGCTTTCAATGAGATGGAGGAGAAAAATGTGATT TCATGGACATCATTGATTACTGGATATGGGAACCATGGACATGGACATGAAGCAATTGCCCTGTTTAAAAAGATGGAATACGAAGGTTTGAAGCCAAATG ACATTACATTCTTATCTCTTCTCTTTGCTTGTAATCATTGTGGATTGACAGGCGAAGGATGGGAGTGCTTCAACAACATGATCAGCAAATACAATATCCT ACCGCGAGCTGAACATTTTTCTTGCATGGTTGATCTTTTTGCACGTGGAGGGCTGTTGGAAGAAGCTTATAATTTGATAAACAAGATGAATATCAAACCT AATGCCTCGCTTTGGGGTGCCATTCTTGGTGCATGCTACATCTATGGCAATATGCCCCTTGCAGAAGAAGCAGCCATACATCTTTTCAAAATGGATCCAG AAAATTCAGTGAACTATGTTGTTTTAGCAGACATATATGCTGCAGCTGGTTCATGGGATAATGCTTGGAAGATGAGAAAATTAATGGAAGAAAGAAATTT AAAAAAGGCTCCTGGGTACAGTTTTATACCTTCCATTCCACAATCAAGTTGA
AA sequence Show only first row Show all	>Potri.007G068900.2 pacid=42765549 polypeptide=Potri.007G068900.2.p locus=Potri.007G068900 ID=Potri.007G068900.2.v4.1 annot-version=v4.1 MRSPNTQTVAYLSKAHPKFNASNPSQLDYSSYMKSLQLCIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTVVSWSA QISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGCLEKSRFASNLIVQSALLDLHSKCGKMEDACYLFGMMEERDVVSWN AIIGAYAVQGFSGDSFRMFRSMMQEGMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGSLIDAYAKCESLASAHCLYKSMPMKDMISC TALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVILCSMFNICANISSLSVGRQIHALALKCKPTYDVAMGNALIDMYAKSGEIKDANRAFNEMEEKNVI SWTSLITGYGNHGHGHEAIALFKKMEYEGLKPNDITFLSLLFACNHCGLTGEGWECFNNMISKYNILPRAEHFSCMVDLFARGGLLEEAYNLINKMNIKP NASLWGAILGACYIYGNMPLAEEAAIHLFKMDPENSVNYVVLADIYAAAGSWDNAWKMRKLMEERNLKKAPGYSFIPSIPQSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20730			Tetratricopeptide repeat (TPR)...		Potri.007G068900 [exp]	0	1
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.008G003600 [exp]	3.87	0.8952
AT2G37690			phosphoribosylaminoimidazole c...		Potri.013G043500 [exp]	4.24	0.8509	PURE.1
AT4G01860			Transducin family protein / WD...		Potri.002G189400 [exp]	4.24	0.8604
AT4G38760			Protein of unknown function (D...		Potri.009G130000 [exp]	7.07	0.8608
AT1G14650			SWAP (Suppressor-of-White-APri...		Potri.007G070700 [exp]	7.93	0.8739
AT1G45332			Translation elongation factor ...		Potri.003G109900 [exp]	8.36	0.8447
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Potri.018G146001 [exp]	8.71	0.8697
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Potri.002G119900 [exp]	13.26	0.8551
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Potri.001G019000 [exp]	16.73	0.8237
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.001G400300 [exp]	17.32	0.8276

Compare expression of checked genes

Potri.007G068900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.