Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79220 390 / 2e-134 Mitochondrial transcription termination factor family protein (.1) AT5G07900 61 / 6e-10 Mitochondrial transcription termination factor family protein (.1) AT1G62110 58 / 4e-09 Mitochondrial transcription termination factor family protein (.1) AT3G46950 57 / 1e-08 Mitochondrial transcription termination factor family protein (.1) AT5G23930 56 / 2e-08 Mitochondrial transcription termination factor family protein (.1) AT2G44020 53 / 2e-07 Mitochondrial transcription termination factor family protein (.1) AT2G21710 49 / 5e-06 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT4G02990 47 / 1e-05 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT1G78930 45 / 5e-05 Mitochondrial transcription termination factor family protein (.1) AT1G62150 45 / 6e-05 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034700 [exp] 98 / 2e-22 AT5G07900 202 / 2e-61 Mitochondrial transcription termination factor family protein (.1) Potri.003G190300 [exp] 93 / 7e-21 AT5G07900 209 / 8e-64 Mitochondrial transcription termination factor family protein (.1) Potri.003G190400 [exp] 89 / 2e-19 AT5G07900 206 / 9e-63 Mitochondrial transcription termination factor family protein (.1) Potri.001G030300 [exp] 87 / 8e-19 AT5G07900 190 / 2e-56 Mitochondrial transcription termination factor family protein (.1) Potri.001G034933 [exp] 87 / 1e-18 AT5G07900 194 / 3e-58 Mitochondrial transcription termination factor family protein (.1) Potri.014G133200 [exp] 86 / 3e-18 AT5G07900 436 / 3e-152 Mitochondrial transcription termination factor family protein (.1) Potri.001G034600 [exp] 84 / 1e-17 AT5G07900 197 / 4e-59 Mitochondrial transcription termination factor family protein (.1) Potri.004G012900 [exp] 83 / 2e-17 AT5G07900 220 / 6e-68 Mitochondrial transcription termination factor family protein (.1) Potri.015G038500 [exp] 82 / 6e-17 AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031184 [exp] 442 / 2e-155 AT1G79220 354 / 2e-120 Mitochondrial transcription termination factor family protein (.1) Lus10031762 [exp] 440 / 2e-154 AT1G79220 353 / 4e-120 Mitochondrial transcription termination factor family protein (.1) Lus10008688 [exp] 117 / 3e-29 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 88 / 6e-19 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10004957 [exp] 88 / 6e-19 AT5G07900 238 / 4e-75 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 77 / 2e-15 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10004329 [exp] 74 / 4e-14 AT5G64950 238 / 2e-75 Mitochondrial transcription termination factor family protein (.1) Lus10016553 [exp] 68 / 9e-13 AT5G07900 171 / 7e-51 Mitochondrial transcription termination factor family protein (.1) Lus10028912 [exp] 68 / 3e-12 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1) Lus10002883 [exp] 65 / 2e-11 AT5G07900 196 / 9e-59 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [poplar] [flax] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Potri.007G069100.2 pacid=42765494 polypeptide=Potri.007G069100.2.p locus=Potri.007G069100 ID=Potri.007G069100.2.v4.1 annot-version=v4.1 ATGGAAGCAAAACCCAGTTCTTTAGTTATCAAAGTTGGCTCCCTTTTGGTAAATTCTCAAAGATTGATTTTTTCAAGCAAAAACCCACTATGTAGTTCTT GTATATTGTCTGGTACCTTCAAGTCTGTGACATGTTCGACAATAAGCCAAACCCAATCTGAAACTGTATCAGGGGGTGGTGCAGAGCAACCAGCTAACTC GGTTGAAGTTCTGAGGAGATATGGTTGTAGCGATGATGACATAGAGAAGATGTTCCTGCGACGCCCTTCTTTGCGCAATGCTGATCTTTCCCAGCTTCAA TTCAAGCTAAATTTACTTTGGGGGTTGGGTATCACATCGAATGACCTTGTTAAGATCATTAATTGTCGCCCACGATTGCTTAGTGTTCGCATAAATCATT TTTTTGATGAGCGTCTGGAGTATTTTATGACCTTGTTTGGATCAAGGGAAACGCTACTCAAGGCCATTATTAGAAATCCTTCTCTCTTGACATATGACTT TCATAATAGGATTAAACCTGTCATCACACTATATGAAGGACTGGGTATTAGTAGAGAGGATTTGGTTCCCTTGCTATTGTCACGGCCTACTATGATTCCG CGAACTTCATTTAATGATGAGAAGATGGAATACATACGCAAAAGCGGGGTTTCCAAGGATTCCAATATGTTTAAGCATGTGGTTAGCATCATTGGTGTCT CAAGGAGTCAGACCATCTGTGAGAAGGCAGCAAATATAGAGAAGTTTGGGATGTCGAATGAAGAAGTTTGGCATCTTATCGGTCGTAGCCCCTATCTCTT GACACTGTCTGTTGATAAGGTTCAAAGGAATATGACGTTTGTAGTGGGCACAATGAAGCTTCCTGCAAATGTGATCCTTGAGCACCCATTTTTGCTTTAC AATAATCTGGAGGCTGTGTTGAAGCCGCGGTGGCTTCTTGCTGGGAAGATAGAGGAGATGGGTCTTTGCCCGAAAATTAAAGGATCATTGATGTTGAGGG CACTTAGGATGGCAGAACAGCGATTCTTGAAGGCATTTGTTTCATGTCACCCTGATGTTGTTGCTAAAGAATTGATGGAGTTCTATACAACGGCAAAATG TGTCAAGCGGCTGGCCGTGTCATCGAAGAAGGCAGTGTTTAAAGGATTTCCTTTCTGA
AA sequence Show only first row Show all	>Potri.007G069100.2 pacid=42765494 polypeptide=Potri.007G069100.2.p locus=Potri.007G069100 ID=Potri.007G069100.2.v4.1 annot-version=v4.1 MEAKPSSLVIKVGSLLVNSQRLIFSSKNPLCSSCILSGTFKSVTCSTISQTQSETVSGGGAEQPANSVEVLRRYGCSDDDIEKMFLRRPSLRNADLSQLQ FKLNLLWGLGITSNDLVKIINCRPRLLSVRINHFFDERLEYFMTLFGSRETLLKAIIRNPSLLTYDFHNRIKPVITLYEGLGISREDLVPLLLSRPTMIP RTSFNDEKMEYIRKSGVSKDSNMFKHVVSIIGVSRSQTICEKAANIEKFGMSNEEVWHLIGRSPYLLTLSVDKVQRNMTFVVGTMKLPANVILEHPFLLY NNLEAVLKPRWLLAGKIEEMGLCPKIKGSLMLRALRMAEQRFLKAFVSCHPDVVAKELMEFYTTAKCVKRLAVSSKKAVFKGFPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79220			Mitochondrial transcription te...		Potri.007G069100 [exp]	0	1
AT4G26980			RNI-like superfamily protein (...		Potri.011G090700 [exp]	1.00	0.9155
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050500 [exp]	2.44	0.8777
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Potri.002G226000 [exp]	2.44	0.9138
AT4G10270			Wound-responsive family protei...		Potri.019G116800 [exp]	4.24	0.8560
AT3G42170			BED zinc finger ;hAT family di...		Potri.018G126750 [exp]	4.58	0.8518
AT1G26650			unknown protein		Potri.008G091500 [exp]	4.69	0.8557
AT2G42120		POLD2	DNA polymerase delta small sub...		Potri.016G045800 [exp]	4.89	0.8551
					Potri.001G042800 [exp]	5.47	0.8447
AT2G24390			AIG2-like (avirulence induced ...		Potri.006G278900 [exp]	6.32	0.8653
AT2G39100			RING/U-box superfamily protein...		Potri.008G215200 [exp]	7.74	0.8533

Compare expression of checked genes

Potri.007G069100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.