Plant FIBer expression Database

Potri.007G069300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79230 576 / 0 STR1, ATRDH1, ATMST1, ST1 ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, mercaptopyruvate sulfurtransferase 1 (.1.2.3)
AT1G16460 513 / 0 STR2, ATMST2, ATRDH2 ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, rhodanese homologue 2 (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G095300
[exp]
558 / 0 AT1G79230 523 / 0.0 ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, mercaptopyruvate sulfurtransferase 1 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031753
[exp]
598 / 0 AT1G79230 553 / 0.0 ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, mercaptopyruvate sulfurtransferase 1 (.1.2.3)
Lus10031177
[exp]
584 / 0 AT1G79230 550 / 0.0 ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, mercaptopyruvate sulfurtransferase 1 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0031 Phosphatase PF00581 Rhodanese Rhodanese-like domain
Representative CDS sequence
>Potri.007G069300.1 pacid=42765613 polypeptide=Potri.007G069300.1.p locus=Potri.007G069300 ID=Potri.007G069300.1.v4.1 annot-version=v4.1
ATGGCGTCAACTATTTTAACAAAGAGTCTATTGGGTCATCGCTTGATTCACTCCTCTTTTTCTCTTTCCCATAAAACCCCACAAATCTTTACTTCTCTCT
TCCCTGGGAGAACATTTCAGAAAAGAGCTGACCCCATCCATACATCATATAAGCCATCTCAGTGGGTTCGTTGTGTAGTTGGGACAAGAGCTAATTTCTC
GACGCAATCTTTATCTTTGAACGAACCTGTTGTCTCTGTTGATTGGCTCCATGCGAACCTCCGGGAGCCTGACATGAAGGTGTTGGATGCATCCTGGTAC
ATGCCTGATGAGCAGAGGAATCCAATTCAAGAGTATCAGGTTGCTCACATTCCTGGTGCCCTGTTCTTTGATGTAGATGGAATAGCAGATCAAACTACAA
ATTTGCCACACATGTTGCCATCAGAGGAAGCTTTTGCAGCTGCTGTTTCTGCTCTTGGTATTGAGAATAAAGATGGATTGGTGGTTTATGATGGGAAAGG
TATCTTTAGTGCTGCTCGTGTTTGGTGGATGTTTCGAGTCTTTGGGCATGAAAAGGTCTGGGTGCTAGATGGAGGTCTGCCAAGATGGCGCGCTTCAGGA
TATGATGTTGAGTCTAGTGCTTCTGGTGATGCTATCTTGAAAGCTAGTGCTGCCAGTGAGGCAATAGAGAAAGTATATCAGGGCCAGACAGTAGGACCAA
TCACATATCAAACAAAGTTTCAGCCACATCTTGTCTGGACACTTGAGCAGGTTAAAAGTAATATTGAAGACAGGACTCATCAACACGTAGATGCTCGTTC
AAAGGCCAGGTTTGATGGCGCTGCTCCAGAACCTCGAAAGGGAATAAAAAGTGGCCATGTTCCTGGCAGCAAGTGCATTCCATTTGCGCAACTGTTAGAT
TCTTCACAGACACTCTTACCAGCAGATGAGCTTAAAAAACGATTTGATCAAGAAGGCATCTCTTTGAAAAGCCCTGTTGTTACTTCATGCGGGACTGGCG
TAACTGCTTGCATTCTTGCTCTGGGTCTCCATCGACTTGGAAAGTCAGATGTTGCAGTCTATGATGGATCTTGGACTGAATGGGGAGCTAATCCTGAAAC
ACCTGTTGACTCTTCATAA
AA sequence
>Potri.007G069300.1 pacid=42765613 polypeptide=Potri.007G069300.1.p locus=Potri.007G069300 ID=Potri.007G069300.1.v4.1 annot-version=v4.1
MASTILTKSLLGHRLIHSSFSLSHKTPQIFTSLFPGRTFQKRADPIHTSYKPSQWVRCVVGTRANFSTQSLSLNEPVVSVDWLHANLREPDMKVLDASWY
MPDEQRNPIQEYQVAHIPGALFFDVDGIADQTTNLPHMLPSEEAFAAAVSALGIENKDGLVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPRWRASG
YDVESSASGDAILKASAASEAIEKVYQGQTVGPITYQTKFQPHLVWTLEQVKSNIEDRTHQHVDARSKARFDGAAPEPRKGIKSGHVPGSKCIPFAQLLD
SSQTLLPADELKKRFDQEGISLKSPVVTSCGTGVTACILALGLHRLGKSDVAVYDGSWTEWGANPETPVDSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G79230 STR1, ATRDH1, A... ARABIDOPSIS THALIANA RHODANESE... Potri.007G069300
[exp]
0 1
AT3G25545 unknown protein Potri.010G134600
[exp]
2.44 0.8010
AT1G42960 unknown protein Potri.007G064100
[exp]
4.00 0.7928
AT4G22300 SOBER1 SUPPRESSOR OF AVRBST-ELICITED ... Potri.011G023000
[exp]
6.32 0.7138
AT3G18940 clast3-related (.1) Potri.004G148700
[exp]
7.74 0.7352
AT4G24820 26S proteasome, regulatory sub... Potri.012G093500
[exp]
8.94 0.7435
AT3G01280 VDAC1, ATVDAC1 ARABIDOPSIS THALIANA VOLTAGE D... Potri.017G078200
[exp]
10.53 0.7536
AT5G08060 unknown protein Potri.004G123700
[exp]
13.00 0.7070
AT1G08220 unknown protein Potri.009G002000
[exp]
16.24 0.7241
AT5G10160 Thioesterase superfamily prote... Potri.003G020300
[exp]
22.02 0.7394
AT5G40810 Cytochrome C1 family (.1.2) Potri.004G203800
[exp]
23.06 0.7052

Potri.007G069300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.