Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16270 994 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT1G79570 981 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 609 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 480 / 9e-151 PB1 domain-containing protein tyrosine kinase (.1) AT3G24715 470 / 4e-146 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 440 / 1e-135 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 436 / 7e-133 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49470 190 / 8e-52 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT1G67890 196 / 1e-51 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06640 188 / 2e-49 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095200 [exp] 1937 / 0 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G123500 [exp] 1129 / 0 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G110000 [exp] 669 / 0 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G052000 [exp] 479 / 2e-149 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.003G176100 [exp] 478 / 4e-149 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.006G170700 [exp] 451 / 6e-139 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 440 / 5e-135 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G190200 [exp] 444 / 8e-134 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 435 / 2e-130 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031749 [exp] 700 / 0 AT1G16270 703 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Lus10031173 [exp] 700 / 0 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10038160 [exp] 474 / 2e-157 AT3G24715 527 / 2e-179 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001315 [exp] 451 / 2e-144 AT5G57610 657 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10006977 [exp] 451 / 1e-139 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031750 [exp] 424 / 5e-138 AT1G79570 334 / 1e-104 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 445 / 2e-135 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 447 / 6e-135 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10025941 [exp] 395 / 3e-118 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10016912 [exp] 189 / 1e-49 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.007G069500.1 pacid=42765343 polypeptide=Potri.007G069500.1.p locus=Potri.007G069500 ID=Potri.007G069500.1.v4.1 annot-version=v4.1 ATGCGTTTAAAAGATGATGTGATGGAAGAGTCAGAGATATATAAACAATATCAATACAATTCTGGGGATCCCAGACATGAGAGATCCCAGCCTGCTTCTC AGGCATATACACCAGACCCTGCAAGCAGCAGAAATTCCAATATGAGACTTGCTGACCTAAATGCACCACCACCAGAAGTTAAACCTGTACTTAACTATTC CATTCAGACAGGTGAGGAGTTTGCTCTTGAATTTATGCGTGATCGAGTTAATCCTAAGAAGCCTCTCATTCCAAATGCTGTTGGTGATCCCAATTATGCT ACTGGTTATCTGGAATTAAAAGGCATTTTAGGCATTAGTCATACAGGGTCTGAAAGTGGATCAGAAATTTCGATGTTAACTATAGTAGAGAGAGGTCAAA AAGAATTTGAGAGGACGAACTCGTCTTTACATGAAGATAGAAGCAACTATGGGTCAGTTCAGTCGGTTCCAAGAACTTCAGGTTATGAAAGTCGTGGAGT GCCGCTACATGGCTATGCTTGCTCCTCTGGAGTCTCCGATAGCTCCTCTGGGAAAATGAAAGTTCTCTGCAGCTTTGGTGGTAAAATCCTACCCCGTCCG AGTGATGGAAAACTGAGGTATGTTGGAGGTCAAACACGCATCATGCGCATAGCAAGGGACATTTCTTGGCATGAGTTTAAGCAGAAAACTTTAGCAATAT ATAGCCAAGCTCTTGTGATAAAGTATCAGCTTCCTGGAGAAGATCTTGATGCCTTGGTTTCTGTTTCATGTGATGAGGATCTGCTAAATATGATGGATGA GTGGAGTGGAGTTGAAGATAGAGAAGGATCACAAAAACTCAGAATGTTTCTCTTCTCAATGAGTGATTTGGAAGATGATCAATTTGGTCTCGGCATTGGA GGGGTTGATTCTGAGGTTCAGTACATAGTTGCTGTCAATGGCATGGATGTGGGAACCAGAAGAGAATTGGTCCTGCATGGTTTAGCAAGCTCTTCAGGAA ATAACTTAGATGAGTTAGATAGATCAAACACAAACAGGGAGACAATTAGTGTTGCAACTACTTATGTTGGGCTCAGCGCTTCACCTTTGACTGACATTTA TCAGTCTTCTCAACCTACTCTTCAAAGTTTTTCCAATGCCTATGAGACCTATCCACAGGTTTATCGTGGCCAGATGATGGATCATAGAGACACCGAGCAG TTTCCATTGCACTATCACCATCACTCATCTAACTACTCCTCCTTGGGAGAAATCCCATATGCAAGACAACTTCATGGGCTCATGAGTGAAGAAGCAGATT TGTACGAGGGACAGCAATATAATAGCTTTCAGGTAAAGAATTCACAGATATCTGTAAAGGAGGTGAAGCCAAGACCTGATGGTTCAATTCAGCAAGAGAT TGACCCAGGAAAAACTCATCCAATAGAGAAAGGTTACCCTGCTCCAGTTGATGAAGTACTAGCAACAGCTGTTGTTCCAGAAGGAGATATATGTACTGTG CCCTCAAAACATGAGGGAAAACACCTAGAACCGAAGAAGGTTTCTTCTTCTGCTGATGATGTGAATCAAGTGCAGGCACCTAAATCTTGGGAAGATGATC AACACTCTGCACCCAGTGGTGCTTCTGGTCCAGGAAATGCTGATTCCGCTTCTAATCCAATTGACTTGAGCTATCTTGAGCTGTCTATACCTCAGAGGGC TTATTATTCAGAGAGAATACCCCAGGGGCAAGCAGAGTTGCTGAATAGATTATCAAAGTCTGGTGATTCACTTGGCATTCAGTTGCTCATTACTCATTCA TGTTCTGACATCACTGAGAACAATCCAACTACAAAATCTGTGGAAAATTTCCATGAGAGTAATCTGGCTGCCCATACTGAACACTCTATTTCAACTGAAA AACCATCATGTACAGGCTCTCAAATCATGGATGATGGAGTCTCTGACTTTGAGACAGATATTACCACAGGTAATCAAAGGAAGCCCCTGGTTGATGAAAA GGGAGAAATGGGATCTGGACATCCAGCTTTGTGCCAAGTAACTTCTGTTGTGCAGCATAAGGATCCTGCAGCTGATCTTCCAGATGAACAGGATGAGATA AAAAGCAGGGATGTCTCTGATAAGGACAATCTGGGGCATTCTCAGCCATTTTTTTGGACAGAGAGCTCAACTAAAGATGTTGAAGGAATACCTTCTGTTG GTGTTTCGTCAACCAAGCAGGCAGAAATCCAAATAGATATTAACGACAGATTCCCTTGTGATTTCCTTTCTGAAATATTCTCAAAAGGGATATTTACCAA GGATGCTTTTGTTGTTAGTCCAATACATAATGATGGAGCTGGTGCAAGTGTGAACATGGAAACTCATGAGCCTAAGCACTGGTCTTATTTTCAGAAGTTG GCAAAGGAGGGGTTTGTTAAAAAAGATTTGTCTATTATTGACCAGGATCACCCTACTACTCCGTTTGTTCTAACAAATGTACAAGATGATAAATCTTATC ATTTCACACCTTCAGCAGCCAGTAGAGATTCAGTGGGCCATGACTATTCTCAAATTAATTTTGGCCAAGACAATCAAAATAATTTACCTGGAATGGCAGT AGCTGATTCTACAATGATGTCCGATTTTGATCCTTCCCAATTGAAGGACACTGAAAGTATGCAGTTTGAGGCTATGATGGAGAACCTACAGTCGCCAGAG TCACAGTATGAGGATGGGAAGTTGGATAACAGGAATGATGGCCTTCCTCCTCGTGATCCTTTTCTGGGAGATTTTGATATCAATACCTTGCAGATCATAA AAAATGAAGATCTTGAAGAGCAGAAAGAGTTGGGTTCTGGCACTTTTGGCACCGTGTATCACGGAAAATGGAGGGGAACGGATGTTGCCATTAAGATGCT AAAAAAGATATGTTTTACTGGACGATCATCAGAGCACGAGAGACTGACCTTAGAGTTTTGGCGGGAAGCTGACATCCTTTCAAAGCTCCACCATCCAAAT GTTGTAGCATTTTATGGCGTGGTTCAAGATGGACATGGGGGGACATTAGCTGCTGTGACGGAGTACATGGTTGATGGTTCTCTTAGAAGTGTTTTACTTC GCAAAGATAGGTATCTAGACCGTCACAAGAGACTTCTCATAGCTATGGATGCTGCATTTGGAATGGAATATCTGCATTCAAAGAATATTGTGCATTTTGA TTTGAAATGTGACAACTTGCTTGTGAACTTGAAAGATCCCCAGAGACCAATCTGCAAGGTTGGTGATTTTGGCCTGTCAAAAATCAAGCGAAATACTTTG GTTTCTGGAGGTGTAAGCGGAACTCTACCATGGATGGCCCCTGAGCTGCTAAACGGAAGCAGTAATAAGGTCTCAGAAAAGGTTGATGTGTTCTCTTTTG CAATTGTCTTGTGGGAAATTCTGACCGGTGAGGAGCCATATGCCAACATGCACTATGGTGCAATTATAGGAGGAATTGTAAACAACACGTTGAGACCAAC AATTCCGAGTTATTGTGATTCTGAATGGAGAAGGTTGATGGAGCAATGTTGGGCCCCTAATCCTGCTGTTAGGCCTTCTTTCACAGAAATTGCCCGTCGT TTGCGCACAATGTCATCAGCTGCTAGCCAAGCCGAAGGACACGAACACAAGGCATCAAAGTAA
AA sequence Show only first row Show all	>Potri.007G069500.1 pacid=42765343 polypeptide=Potri.007G069500.1.p locus=Potri.007G069500 ID=Potri.007G069500.1.v4.1 annot-version=v4.1 MRLKDDVMEESEIYKQYQYNSGDPRHERSQPASQAYTPDPASSRNSNMRLADLNAPPPEVKPVLNYSIQTGEEFALEFMRDRVNPKKPLIPNAVGDPNYA TGYLELKGILGISHTGSESGSEISMLTIVERGQKEFERTNSSLHEDRSNYGSVQSVPRTSGYESRGVPLHGYACSSGVSDSSSGKMKVLCSFGGKILPRP SDGKLRYVGGQTRIMRIARDISWHEFKQKTLAIYSQALVIKYQLPGEDLDALVSVSCDEDLLNMMDEWSGVEDREGSQKLRMFLFSMSDLEDDQFGLGIG GVDSEVQYIVAVNGMDVGTRRELVLHGLASSSGNNLDELDRSNTNRETISVATTYVGLSASPLTDIYQSSQPTLQSFSNAYETYPQVYRGQMMDHRDTEQ FPLHYHHHSSNYSSLGEIPYARQLHGLMSEEADLYEGQQYNSFQVKNSQISVKEVKPRPDGSIQQEIDPGKTHPIEKGYPAPVDEVLATAVVPEGDICTV PSKHEGKHLEPKKVSSSADDVNQVQAPKSWEDDQHSAPSGASGPGNADSASNPIDLSYLELSIPQRAYYSERIPQGQAELLNRLSKSGDSLGIQLLITHS CSDITENNPTTKSVENFHESNLAAHTEHSISTEKPSCTGSQIMDDGVSDFETDITTGNQRKPLVDEKGEMGSGHPALCQVTSVVQHKDPAADLPDEQDEI KSRDVSDKDNLGHSQPFFWTESSTKDVEGIPSVGVSSTKQAEIQIDINDRFPCDFLSEIFSKGIFTKDAFVVSPIHNDGAGASVNMETHEPKHWSYFQKL AKEGFVKKDLSIIDQDHPTTPFVLTNVQDDKSYHFTPSAASRDSVGHDYSQINFGQDNQNNLPGMAVADSTMMSDFDPSQLKDTESMQFEAMMENLQSPE SQYEDGKLDNRNDGLPPRDPFLGDFDINTLQIIKNEDLEEQKELGSGTFGTVYHGKWRGTDVAIKMLKKICFTGRSSEHERLTLEFWREADILSKLHHPN VVAFYGVVQDGHGGTLAAVTEYMVDGSLRSVLLRKDRYLDRHKRLLIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPQRPICKVGDFGLSKIKRNTL VSGGVSGTLPWMAPELLNGSSNKVSEKVDVFSFAIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSYCDSEWRRLMEQCWAPNPAVRPSFTEIARR LRTMSSAASQAEGHEHKASK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16270			Protein kinase superfamily pro...		Potri.007G069500 [exp]	0	1
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Potri.010G184300 [exp]	5.47	0.8054
AT1G04590		EMB2748	unknown protein		Potri.016G103000 [exp]	8.71	0.8230
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Potri.011G086500 [exp]	14.96	0.8109	FIM1.1
AT4G37020			unknown protein		Potri.007G043200 [exp]	15.87	0.8224
AT1G76140			Prolyl oligopeptidase family p...		Potri.002G013900 [exp]	20.97	0.7641
AT5G27520		AtPNC2, PNC2	peroxisomal adenine nucleotide...		Potri.010G092100 [exp]	21.65	0.8038
AT5G54930			AT hook motif-containing prote...		Potri.001G422966 [exp]	26.83	0.7893
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Potri.013G088400 [exp]	27.38	0.7901
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.008G219000 [exp]	29.88	0.7844
AT5G09580			unknown protein		Potri.001G285000 [exp]	30.03	0.7927

Compare expression of checked genes

Potri.007G069500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.