Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50140 1215 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G19740 1204 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02480 413 / 1e-125 AAA-type ATPase family protein (.1) AT1G02890 410 / 2e-124 AAA-type ATPase family protein (.1.2) AT4G24860 354 / 6e-105 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 340 / 2e-102 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G52882 330 / 8e-99 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G28000 327 / 1e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G62130 320 / 2e-93 AAA-type ATPase family protein (.1) AT5G53540 240 / 2e-70 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G093300 [exp] 1630 / 0 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G096300 [exp] 411 / 8e-125 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.015G094100 [exp] 404 / 2e-122 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.002G205900 [exp] 399 / 7e-121 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.014G131000 [exp] 396 / 9e-120 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.001G097600 [exp] 345 / 6e-104 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G133700 [exp] 338 / 9e-102 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.015G026900 [exp] 324 / 1e-96 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G035400 [exp] 321 / 2e-95 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013429 [exp] 1160 / 0 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010204 [exp] 1155 / 0 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 1145 / 0 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040976 [exp] 459 / 3e-149 AT3G19740 472 / 2e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10036347 [exp] 379 / 4e-113 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10010282 [exp] 378 / 6e-113 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10024692 [exp] 333 / 8e-100 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10027551 [exp] 330 / 9e-99 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028752 [exp] 328 / 7e-98 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10039309 [exp] 328 / 9e-98 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.007G069800.2 pacid=42765532 polypeptide=Potri.007G069800.2.p locus=Potri.007G069800 ID=Potri.007G069800.2.v4.1 annot-version=v4.1 ATGTATACTGGAATATTTAAGTGTAGGAATCAGAGATGGTGTTCTTTCTTTCATCCATCAAAGCATTTCATTAGGCCAAACTGCCAGGATCGGCCTCTGA GTTGTACAACAGTAGTGAGGGACCACTTTTCACATGTTAGTTTCATTAAAAGACAGCTATTACATTCAATTTCATCAAGGAGTACTGCCTTTGGAAATAG TGATAGTGGTTTACATATAAGGTCTAATATGTGTTGGACGAATATTCAATTCCGCACATGTAGTTCGGGAGCCAATGGAAGGAATACAAGTGAGGATAAA CATGGCCCGGTGAAAGATGGGGCTAGCTTTGATAATGAGAAGACTCAGCGAGAAAGAGTTAGTGAAGATGCGAAGCATTGCGATGCACACGCTCAATTAG GGGAACAAGATCAAAAGGAGTGGCTTCATAATGAGAAGCTTGCTATAGAAAGTAAAAGGAAGGAATCTCCATTTTTGACCAGACGAGAAAAGTTTAAAAA TGAATTCTTGAGGAGAATTGTTCCATGGGAGAAGTTACATGTTTCTTGGGATAATTTTCCGTACTACATCAATGAGCACACTAAAAATACTCTGGTGGAA TGTGTTACTTCCCATTTGAAACATAAAAAATGCACCACTTCCTATGGGGCCCGTCTGACATCTTCAAGTGGGAGAATTATGCTCCAGAGTGTTCCAGGAA CTGAGCTTTATCGGGAAAGAACAGTTAAAGCACTTGCACGGGATTTACAAGTTCCCCTGTTGGTGCTTGATAGCAGCGTTCTTGCTCCTTATGATTTTGG CGATGATGAGATTGAATCAGATGATAGTGCAGGAGAGGAGAGTTGCTCGGAGTCAGAAGTTGAGGATGACAATGATGCAGTCAATGAAGAGGAATGGACA AGCAGTGCAGAGGCAAAATCAGATTGTAGTGATGACGATGCAGTTGACCTGGAGGCAAATGCTGAGGCAGCCTTGAAGAAGCTTCTTCCCTGTAGCCTTG AAGAATTTGAGAAGAGAGTTTCTGGAGAATGTGACAGTTCCTCTGAGTCCTCAAAGAATGAGTCCACAGGCACTTCTGAGATCCCCAAAAGGCCACTTAA CAAAGGGGATCGGGTGAAGTACATTGGGCCGTCCATACGCATTGAGGCTGATGACAGGGTCATATTGGGGAAGATACCAACATCTGATGGTCTGAAAAAT GCTTATACAACTATCCGTGGCAGGCCTTTATCAAGCGGTCAACTTGGGGAGGTATATGAGGTGAATGGAGATCGAGTCGCTGTGATTTTAGATATCAGTA ATGACAACAAAGAAGATGATGGAGAGAAGGATGAGAAGCTCATGGAGCAGCCTGCAAAAGCACCAGTTTATTGGATAGATGCTAAGGATATTGAGCATGA TCCCGACACTGGGATAGAATATTGCTATATTGCGATGGAGGTTTTATGTGAGGTTTTGTGTTCTGTGCAACCCCTTATTGTCTATTTTCCAGATTCTTCT CAGTGGTTGTCTAGGGCGGTTCCCAAGTCAAACCGCAAGGATTTTTTAAGCAAGGTGCAAGAAATGTTTGACAAATTATCAGGTCCTGTTGTTTTGATAT GTGGACAAAACAAAGCTGAAACTGGGTCAAAGGAGAAAGAAAGATTTACAATGCTACTCCCGAATCTTGGACGGCTGGCAAAGCTGCCTCTCTCCTTGAA GCACCTCACTGATGGACTCAGAGGTGCAAAGAGGTCCAATGAAAATGACATAACTAAGCTCTTCACCAATATTTTGTGCCTCTATCCCCCAAAGGAGGAA GATCTTCTTAGAACATTCAATAAACAGGTTGAAGAGGACAGAAGAATTGTGATATCAAGGAGCAATTTAATTGAACTGCACAAGGTTCTTGAAGAAAATG AGATGTCATGCATGGACCTATTGCATATAAATACTGATGGCCTCATTCTAACAAAGCGGAAGGCTGAAAAAGTCATTGGCTGGGCTAAGAATCATTACTT ATCATCATGCCTGCTCCCATGCATAAAAGGGGATCGATTGTCTTTGCCCCGAGAAAGCCTTGAGATGGCAATTGTGAGGTTGAAGGAGCAAGAAACCATA TCTGAAAAACCATCACAGAATTTGAAGAACTTGGCCAAGGATGAGTATGAGAGCAACTTTATCTCAGCTGTGGTAGCTCCAGGTGAAATTGGTGTCAAAT TCAATGACGTAGGTGCTCTTGAAGAAGTGAAGAAGGCTTTGAATGAACTTGTCATTCTTCCAATGAGGAGACCAGAACTTTTCTCTCATGGAAATTTGCT GCGGCCTTGCAAAGGGATTTTGCTTTTTGGACCTCCTGGAACTGGGAAAACCCTTCTTGCCAAAGCGCTTGCAACAGAGGCAGGGGCAAACTTTATCAGC ATAACTGGTTCAACTCTTACTTCAAAGTGGTTTGGAGATGCTGAAAAGCTCACAAAGGCTCTCTTCTCCTTTGCCAGCAAGCTGGCTCCTGTCATTATAT TTGTTGATGAGGTTGACAGTTTGCTTGGTGCTCGTGGTGGCTCTTTTGAGCATGAAGCTACAAGAAGAATGAGAAATGAATTCATGGCAGCATGGGATGG ATTGCGATCAAAAGATAGCCAGAGAATCCTTATCCTTGGTGCCACTAATCGACCATTTGATCTTGATGATGCTGTAATCCGCCGGTTACCTAGGAGAATA CACGTGGACCTACCAGACGCCGAAAATCGTATGAAGATTCTCAGAATAATTCTGTATCGAGAAAATTTAGAAGCTGACTTCCAGTTTGACAAACTTGCAA ATGCAACCGAGGGATATTCCGGAAGTGATTTGAAGAACCTATGTATCGCTGCAGCATATAGACCAGTCGAAGAACTTTTAGAAGAAGAAAAGGGTGGCAA GAATGGTGCAACTCCGGCATTAAGACCACTTAATTTGGAAGATTTCATTCAGTCAAAAGCAAAGGTGGGGCCGTCAGTTTCCTTTGACGCAGCAAGTATG AATGAGCTGAGGAAGTGGAATGAACAATATGGAGAAGGTGGAAACAGAAAAAAATCACCTTTCGGTTTCTGA
AA sequence Show only first row Show all	>Potri.007G069800.2 pacid=42765532 polypeptide=Potri.007G069800.2.p locus=Potri.007G069800 ID=Potri.007G069800.2.v4.1 annot-version=v4.1 MYTGIFKCRNQRWCSFFHPSKHFIRPNCQDRPLSCTTVVRDHFSHVSFIKRQLLHSISSRSTAFGNSDSGLHIRSNMCWTNIQFRTCSSGANGRNTSEDK HGPVKDGASFDNEKTQRERVSEDAKHCDAHAQLGEQDQKEWLHNEKLAIESKRKESPFLTRREKFKNEFLRRIVPWEKLHVSWDNFPYYINEHTKNTLVE CVTSHLKHKKCTTSYGARLTSSSGRIMLQSVPGTELYRERTVKALARDLQVPLLVLDSSVLAPYDFGDDEIESDDSAGEESCSESEVEDDNDAVNEEEWT SSAEAKSDCSDDDAVDLEANAEAALKKLLPCSLEEFEKRVSGECDSSSESSKNESTGTSEIPKRPLNKGDRVKYIGPSIRIEADDRVILGKIPTSDGLKN AYTTIRGRPLSSGQLGEVYEVNGDRVAVILDISNDNKEDDGEKDEKLMEQPAKAPVYWIDAKDIEHDPDTGIEYCYIAMEVLCEVLCSVQPLIVYFPDSS QWLSRAVPKSNRKDFLSKVQEMFDKLSGPVVLICGQNKAETGSKEKERFTMLLPNLGRLAKLPLSLKHLTDGLRGAKRSNENDITKLFTNILCLYPPKEE DLLRTFNKQVEEDRRIVISRSNLIELHKVLEENEMSCMDLLHINTDGLILTKRKAEKVIGWAKNHYLSSCLLPCIKGDRLSLPRESLEMAIVRLKEQETI SEKPSQNLKNLAKDEYESNFISAVVAPGEIGVKFNDVGALEEVKKALNELVILPMRRPELFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFIS ITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGSFEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPFDLDDAVIRRLPRRI HVDLPDAENRMKILRIILYRENLEADFQFDKLANATEGYSGSDLKNLCIAAAYRPVEELLEEEKGGKNGATPALRPLNLEDFIQSKAKVGPSVSFDAASM NELRKWNEQYGEGGNRKKSPFGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50140			P-loop containing nucleoside t...		Potri.007G069800 [exp]	0	1
AT5G36000			unknown protein		Potri.014G098300 [exp]	9.32	0.8186
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184100 [exp]	9.79	0.8168
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.005G158300 [exp]	12.24	0.7029
AT1G61330			FBD, F-box and Leucine Rich Re...		Potri.011G042900 [exp]	13.56	0.8125
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Potri.015G008300 [exp]	16.15	0.8164
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182800 [exp]	16.88	0.8116
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.009G098000 [exp]	20.71	0.7538
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Potri.001G473200 [exp]	22.71	0.8106
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184400 [exp]	24.59	0.8003
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Potri.006G218850 [exp]	26.24	0.7945

Compare expression of checked genes

Potri.007G069800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.