Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19760 689 / 0 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT1G51380 572 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G13920 490 / 2e-173 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G54270 486 / 8e-172 EIF4A-2 eif4a-2 (.1.2) AT1G72730 475 / 2e-167 DEA(D/H)-box RNA helicase family protein (.1) AT4G00660 290 / 1e-93 ATRH8 RNAhelicase-like 8 (.1.2) AT3G61240 275 / 8e-88 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G45810 271 / 3e-86 DEA(D/H)-box RNA helicase family protein (.1) AT5G11200 232 / 5e-72 DEAD/DEAH box RNA helicase family protein (.1.2.3) AT5G11170 232 / 5e-72 DEAD/DEAH box RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G093900 [exp] 769 / 0 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.018G061050 [exp] 488 / 2e-172 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G225700 [exp] 485 / 2e-171 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.001G197900 [exp] 484 / 4e-171 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.003G043700 [exp] 481 / 9e-170 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.014G081100 [exp] 286 / 3e-92 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.002G157500 [exp] 286 / 3e-92 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.006G119000 [exp] 239 / 4e-74 AT3G53110 646 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G028600 [exp] 228 / 1e-70 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017407 [exp] 720 / 0 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10010206 [exp] 707 / 0 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10040975 [exp] 467 / 2e-165 AT3G19760 494 / 1e-176 eukaryotic initiation factor 4A-III (.1) Lus10017153 [exp] 452 / 3e-158 AT3G13920 785 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10037620 [exp] 450 / 1e-157 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10006878 [exp] 450 / 2e-157 AT3G13920 787 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10021583 [exp] 317 / 8e-107 AT3G13920 540 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10017804 [exp] 286 / 7e-92 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10014783 [exp] 281 / 5e-90 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10030377 [exp] 278 / 9e-89 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G070000.1 pacid=42765423 polypeptide=Potri.007G070000.1.p locus=Potri.007G070000 ID=Potri.007G070000.1.v4.1 annot-version=v4.1 ATGGCCACAAGCGTAGTACCGGCTGGGCGGAGCGCTAGGAGGGCTGCGGCGGAGGATGAAAAGTTAGTGTTTGAAACGACGGAGGGAATAGAACCTGTTG CAAGTTTCGATGAGATGGGATTGAAAGAAGATGTACTGAGAGGAATTTATAATTATGGATTTGAAAAGCCGTCAGCGATACAACAAAGAGCTTTAATGCC AATAATTAAAGGGCGTGATGTTATAGCACAAGCTCAATCTGGTACTGGAAAGACCTCTATGATTGCCCTTACTGCTTGTCAGCTTGTTGATACTGCTAAC AGAGAGGTCCAGGCACTGATATTGTCACCTACAAGGGAACTGGCAGAGCAGACAGAGAAAGTGATAACGGCAATTGGTGAAAACATTAATATACAAGTAC ATGCATGCATTGGAGGCAAAAGCGTGGGCGAGGATATTCGAAAACTAGAATATGGAGTTCATGTAGTCTCTGGAACTCCAGGCAGAGTCTGTGACATGAT CAAGAGAAGGTCATTACGTACTAGAGCCATCAGAGTACTAGTTCTTGATGAATCTGATGAGATGTTGAGCAGAGGGTTCAAGGATCAAATTTATGATGTT TACAGATATCTTCCACCCGAGCTTCAGGTTGTCCTGATTTCTGCCACTCTTCCTAATGAAATTCTGGAGATTACAAGCAAGTTCATGACAGATCCTGTAA AGATTCTTGTGAAACGTGATGAGTTGACTTTGGAGGGCATCAAGCAATTTTTTGTTGCTGTGGAAAAAGAAGAATGGAAATTTGAGACTCTGACTGACCT TTATGATACTCTTACCATCACTCAAGCTGTTATTTTCTGCAATACAAAGCGGAAGGTTGATTGGTTAACCGCCAAGATGGTTGAATTTAACTTTACTGTC TCAGCAATGCATGGTGACATGCCTCAGAGGGAGAGAGATGCAATTATGTCTAATTTCCGTCTGGGTGAAACTCGTGTACTGATCACAACTGATGTTTGGG CTCGGGGGCTTGATGTTCAACAAGTTTCTTTGGTGATCAACTATGACCTTCCAAACAATCGAGAGCTTTACATTCATCGAATTGGTCGTTCTGGTCGTTT TGGACGTAAGGGTGTTGCCATTAATTTTGTCAAAAGTGATGATATCAGGATCTTAAGAGATATTGAGCAGTATTACAGCACCCAGATTGATGAAATGCCG ATGAATATTGGTGATCTGATATAA
AA sequence Show only first row Show all	>Potri.007G070000.1 pacid=42765423 polypeptide=Potri.007G070000.1.p locus=Potri.007G070000 ID=Potri.007G070000.1.v4.1 annot-version=v4.1 MATSVVPAGRSARRAAAEDEKLVFETTEGIEPVASFDEMGLKEDVLRGIYNYGFEKPSAIQQRALMPIIKGRDVIAQAQSGTGKTSMIALTACQLVDTAN REVQALILSPTRELAEQTEKVITAIGENINIQVHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRSLRTRAIRVLVLDESDEMLSRGFKDQIYDV YRYLPPELQVVLISATLPNEILEITSKFMTDPVKILVKRDELTLEGIKQFFVAVEKEEWKFETLTDLYDTLTITQAVIFCNTKRKVDWLTAKMVEFNFTV SAMHGDMPQRERDAIMSNFRLGETRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMP MNIGDLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Potri.007G070000 [exp]	0	1
AT1G65290		MTACP2	mitochondrial acyl carrier pro...		Potri.019G055300 [exp]	1.73	0.8375
AT3G02530			TCP-1/cpn60 chaperonin family ...		Potri.004G101500 [exp]	3.16	0.8591
AT3G62810			complex 1 family protein / LVR...		Potri.014G129800 [exp]	8.77	0.8014
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.005G098100 [exp]	14.42	0.8286	LOS1.3
AT1G16740			Ribosomal protein L20 (.1)		Potri.017G119300 [exp]	15.62	0.8438
AT3G03420			Ku70-binding family protein (....		Potri.017G120800 [exp]	15.93	0.7125
AT5G39600			unknown protein		Potri.012G106900 [exp]	17.74	0.8070
AT1G80670		RAE1	RNA export factor 1, Transduci...		Potri.003G180000 [exp]	18.73	0.7785
AT3G09890			Ankyrin repeat family protein ...		Potri.006G121500 [exp]	20.49	0.7887
AT4G26400			RING/U-box superfamily protein...		Potri.017G038300 [exp]	22.44	0.7666

Compare expression of checked genes

Potri.007G070000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.