Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13530 1960 / 0 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT3G07980 1868 / 0 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT3G06030 240 / 4e-67 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G54960 237 / 2e-66 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G09000 238 / 3e-66 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G53570 222 / 3e-61 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT5G66850 220 / 6e-60 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT4G08500 217 / 1e-59 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT1G63700 218 / 2e-58 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT4G08470 206 / 3e-56 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G094200 [exp] 2583 / 0 AT3G13530 1979 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Potri.008G149500 [exp] 250 / 3e-70 AT3G06030 681 / 0.0 NPK1-related protein kinase 3 (.1) Potri.010G092000 [exp] 243 / 1e-67 AT3G06030 698 / 0.0 NPK1-related protein kinase 3 (.1) Potri.005G033400 [exp] 238 / 4e-66 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.013G022700 [exp] 238 / 4e-66 AT1G09000 713 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.001G102900 [exp] 225 / 2e-60 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.002G129100 [exp] 219 / 2e-59 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G172200 [exp] 215 / 3e-59 AT4G08500 421 / 6e-141 MAPK/ERK kinase kinase 1 (.1) Potri.012G143900 [exp] 221 / 4e-59 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010209 [exp] 1968 / 0 AT3G13530 1800 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10017408 [exp] 1960 / 0 AT3G13530 1761 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10000135 [exp] 436 / 8e-143 AT3G13530 434 / 2e-143 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10034060 [exp] 245 / 8e-69 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10010519 [exp] 244 / 3e-68 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10015185 [exp] 238 / 1e-66 AT1G09000 692 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10031506 [exp] 230 / 3e-63 AT1G09000 659 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10003745 [exp] 211 / 7e-61 AT4G08500 400 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Lus10042698 [exp] 219 / 2e-60 AT4G08500 518 / 5e-179 MAPK/ERK kinase kinase 1 (.1) Lus10014976 [exp] 221 / 1e-59 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.007G070100.3 pacid=42766363 polypeptide=Potri.007G070100.3.p locus=Potri.007G070100 ID=Potri.007G070100.3.v4.1 annot-version=v4.1 ATGTCTCGGCAAACGCCATCGTCTCATTTTCTTAAATCGAAGACTCTCGATAACAAATATATGCTTGGAGATGAGATTGGAAAAGGAGCGTATGGTCGAG TGTATAAAGGTTTGGATTTGGAGAATGGGGATTTTGTTGCAATTAAACAAGTTTCCTTGGAGAATATTGCCCAAGAGGATCTTAATATCATCATGCAAGA GATAGATTTACTGAAGAATTTGAACCATAAAAACATTGTGAAATATCTCGGATCATCGAAGACAAAGACTCATCTTCACATAATCCTTGAGTATGTTGAG AATGGCTCGCTTGCAAACATTATCAAGCCAAATAAATTCGGGCCTTTTCCAGAGTCTTTGGTGGCTGTTTACATTGCCCAGGTTCTGGAAGGATTAGTTT ATTTGCATGAACAGGGTGTTATCCATCGAGATATCAAGGGTGCAAACATATTGACGACCAAAGAGGGCCTTGTGAAACTTGCTGATTTTGGTGTTGCAAC AAAATTAACTGAAGCTGATGTTAATACACATTCAGTTGTTGGAACGCCATATTGGATGGCCCCAGAGGTTATTGAAATGTCAGGGGTTTGTGCCGCTTCT GACATCTGGAGTGTTGGCTGCACCGTGATTGAACTTCTTACATGTGTACCACCTTACTATGATTTGCAGCCAATGCCAGCTCTCTTTCGTATTGTTCAGG ATGATAATCCTCCGATACCTGATAGCTTATCTCCTGACATTACAGACTTTCTGCGCCAGTGCTTCAAGAAGGATGCTACGCAGCGGCCCGATGCAAAAAC ACTACTTTCTCATCCTTGGATACTGAATTCTAGGCGTGCATTGAACTCTTTCCGTCATAGTGGATCAATAAGAAGCATACAGGAAGATGTTTCAGTCGAT GCGGTAATTTTAAATGGAGATAATCAGAGTACTGGCCAAATTAGTTCTGTGGATAAAACAGAAGCTTCTGTTGCTGATTTTGAAGCTGTTTCCAGGAAAG AATTATTGACAGTGTCTGATGATGTCAGTAAGTCTTGTAAGGATAATTCCTCAAATGATGAAGTCGAGGAAAGAGCTGATAAATTAGACAATGATCTCCA TTCAGATCAAGTCCCGACCCTAGCTATTCATGAAAATTCATCTCTCAAAACTAGTTCTGGCAGACTATCTATGAATAAAGTAGCTGCTGCTTGTGCTCCG CTTCATGGGTCAGCACATATGCATGACCAGGATCAGGCTCTGAGTAATTGTGACATGGAATCTCCTGATGCAAGAGGGAAAAACATAGATAGAAGGGATG GGGGAAAAACAAATTCTACTCATGTTGAGAATGGATCATTTGGTTTTGCAACAAGAAGTCAAGATAATGGGCTTCAAAAGGCTGTGAAGACATCAATGAA CTTGGGAGGAAATGAGCTCAGTAAATTTAGTGACACTCCAAGAGATGCTTCACTGGATGATTTATTTCATCCCCTCAATAAAAATCCAGAGGATCGGGCA GCTGAAGCCTCAACATCTGCCTCAACATCACATATGAACCAAGGGAATGCTGTTGTGGCTGATGCAGGGAAAAATGATCTGGCTACAAGGTTGAGAGCTA CAATTGCTCAAAAACAAATGGAGAATGAAATGGGGAAGACAAACGGTGGTGGTGATTTGTTTAGCCTAATGATGGGTGTTCTGAAGGATGGTGTGATTGA TATTGATGGTTTGGTTTTTGATGAAAAATTGCCTCCAGAAAATCTCTTTCCTCTCCAGGCTGTTGAGTTTAGCAGGTTAGTTGGGTCGTTAAGACCTGAG GAATCAGAAGAGGTGATTGTATCTGCATGCCAGAAACTTATTAGCATCTTTCACCAGCGCCCTGAGCAGAAAATTGTTTTTATTACCCAGCATGGATTGC TTCCTCTAATGGAATTACTTGAAGTTCCTAAAACTCGTGTTATATGTTCTGTCCTCCAACTTATAAATCAGATTGTGAAAGATAATACCGATTTCCAGGA AAATGCATGTCTTGTTGGCCTGATCCCTGTGGTCATGGGTTTTGCTGGACCTGATCGCCCCCGTGAGGTTCGCATGGAGGCAGCTTATTTCTTGCAGCAG CTATGCCAGTCAAGCTCGTTGACATTGCAAATGTTCATTGCTTGCCGTGGAATACCTATCCTGGTGGGTTTTCTAGAGGCTGATCATGCTAAGTACAGGG ACATGGTTCACCTAGCTATTGATGGCATGTGGCAGGTCTTTAAGCTTCAGAGATCAACCCCAAGAAATGATTTCTGTCGCATAGCTGCGAAAAATGGAAT ACTGTTCAGACTTATCAACACTCTTTATAGCTTGAATGAGGCAACTAGGCTAGCTTCAATATCCATGGGAACTGGATTCCCACTAGATGGTTTAGCTCAA CGACCACGATCTGGTCCCTTGGATTTCAATCATCCTATTTTCATTCAGAGCGAGCCACCACTTTCTGCATCTGATCAGCCTGATATCCTTAAATTTAGGC ATGGAATGATCGATCATCCCTTGCCTTCTGTGACACAAGAACCATCACGTGCTTCAACTTCACATTCCCAAAGGCTGGATGCCATTCAACCAGATGCCAG ATATCTTGGGACAGACACTGATGGGCCTCAATCTAGTAATGAAGCAATCGAAGCTACAGTTGCTTCCAAGTTGCCAGATCCAGCAGCTTTAGGAAAAGCT GCAAATATGGGTATCAAAGAACCTCCAGGAATTGCTTCTAAAGAGCGGGATAACTTGGATCGGTGGAAAAGTGATCCATCACGCCCAGAAACTGAACTTA GGCAGCAGCGAGTCACTGGTTCCACGCAAAGGACATCTACTGATAGGCCTCCAAAGTTGATAGAAAGTGCATCAAACGGTCTTACTTCTGTGGTATCTGC TCAGCCAGAGCAAGTTCGTCCTCTTCTAAGCTTGCTGGAGAAGGAACCCCCTTCTAAGCATTTCTCTGGTCAGTTGGAGTATGCACGTCACCTCTCAGGG TTGGAGAGACATGAAAGTATACTGCCTTTATTACATGGATCTGAGAAGAAAACAAATGGTGAATTGGATTTTCTGATGGCAGAGTTTGCAGAGGTTTCTG GGCGTGGAAGAGAAAATGGAAATCTAGACTCCATGCCTAGAATTTCACATAAAACAGTGAGTAAGAAGGTTGGACCAGTTGCACCTAATGAAGGAGCTGC TTCCACATCTGGTATTGTATCTCAAACAGCATCTGGTGTATTGTCTGGTTCGGGTGTTCTAAATGCTAGACCTGGGAGTGCAACATCATCTGGGTTACTT TCCCAGATGGTATCAGCAGAGGTTGCGAGGGAATACCTGGAGAAAGTGGCGGACCTTCTGCTCGAGTTTTCTCAAGCTGACACAACTGTAAAATCCTACA TGTGTAGCCAAAGCTTGCTTAGCCGTCTTTTTCAGATGTTCAATAGAATTGAGCTCCCTATTCTTTTAAAGATACTTAAGTGTATCGATAATCTGTCAAC TGACCCAAACTGCTTAGAGAATCTTCAGCGAGCAGATGCAATTAAGTACTTGATTCCAAATCTTGAACTCAAAGATGGACCTCTTGTAGATCAAATTCAT AGTGAGGTCCTCAATGCACTTTTTAACCTCTGCAAGATAAATAAGAGGAGACAGGAACAAGCTGCTGAAAATGGAATCATTCCACACTTAATGAATTTTA TTATGTCTGATTCTCCTTTGAAATCGCATGCATTACCTCTACTGTGTGACATGGCTCATGCATCACGTAATTCAAGAGAACAATTAAGGGCCCATGGTGG ATTGGATGCATACTTGAGCCTACTTGATGATGTGGTTTGGTCAGTGACAGCACTAGATTCAATTGCTGTTTGCTTGGCTCATGACAATGACAACCACAAA GTGGAACAGGCATTGCTAAAAAAGGATGCAGTTCAGAAATTAGTGAAGTTTTTCCAATGCTGCCCCGAACAACAATTTGTGCATATATTGGAGCCATTCT TGAAAATTATCACGAAATCATCCCGGATAAATACAACTTTAGCTGTTAATGGCTTGACACCTCTGCTCATTGCAAGACTGGATCATCAAGATGCCATAGC TCGTCTTAATCTGCTCAAACTAATAAAGGCTGTGTATGAGCACCACCCACGTCCAAAGCAATTGATCGTGGAGAATGACTTGCCCCAAAAACTTCTGAAC TTGATCGAGGAACGTAGGGACGGGCAAAGCTCCGGAGGCCAAGTGTTAGTGAAACAAATGGCTACTTCGCTACTTAAAGCACTTCATATAAACACTGTTC TGTAA
AA sequence Show only first row Show all	>Potri.007G070100.3 pacid=42766363 polypeptide=Potri.007G070100.3.p locus=Potri.007G070100 ID=Potri.007G070100.3.v4.1 annot-version=v4.1 MSRQTPSSHFLKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSSKTKTHLHIILEYVE NGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAAS DIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDDNPPIPDSLSPDITDFLRQCFKKDATQRPDAKTLLSHPWILNSRRALNSFRHSGSIRSIQEDVSVD AVILNGDNQSTGQISSVDKTEASVADFEAVSRKELLTVSDDVSKSCKDNSSNDEVEERADKLDNDLHSDQVPTLAIHENSSLKTSSGRLSMNKVAAACAP LHGSAHMHDQDQALSNCDMESPDARGKNIDRRDGGKTNSTHVENGSFGFATRSQDNGLQKAVKTSMNLGGNELSKFSDTPRDASLDDLFHPLNKNPEDRA AEASTSASTSHMNQGNAVVADAGKNDLATRLRATIAQKQMENEMGKTNGGGDLFSLMMGVLKDGVIDIDGLVFDEKLPPENLFPLQAVEFSRLVGSLRPE ESEEVIVSACQKLISIFHQRPEQKIVFITQHGLLPLMELLEVPKTRVICSVLQLINQIVKDNTDFQENACLVGLIPVVMGFAGPDRPREVRMEAAYFLQQ LCQSSSLTLQMFIACRGIPILVGFLEADHAKYRDMVHLAIDGMWQVFKLQRSTPRNDFCRIAAKNGILFRLINTLYSLNEATRLASISMGTGFPLDGLAQ RPRSGPLDFNHPIFIQSEPPLSASDQPDILKFRHGMIDHPLPSVTQEPSRASTSHSQRLDAIQPDARYLGTDTDGPQSSNEAIEATVASKLPDPAALGKA ANMGIKEPPGIASKERDNLDRWKSDPSRPETELRQQRVTGSTQRTSTDRPPKLIESASNGLTSVVSAQPEQVRPLLSLLEKEPPSKHFSGQLEYARHLSG LERHESILPLLHGSEKKTNGELDFLMAEFAEVSGRGRENGNLDSMPRISHKTVSKKVGPVAPNEGAASTSGIVSQTASGVLSGSGVLNARPGSATSSGLL SQMVSAEVAREYLEKVADLLLEFSQADTTVKSYMCSQSLLSRLFQMFNRIELPILLKILKCIDNLSTDPNCLENLQRADAIKYLIPNLELKDGPLVDQIH SEVLNALFNLCKINKRRQEQAAENGIIPHLMNFIMSDSPLKSHALPLLCDMAHASRNSREQLRAHGGLDAYLSLLDDVVWSVTALDSIAVCLAHDNDNHK VEQALLKKDAVQKLVKFFQCCPEQQFVHILEPFLKIITKSSRINTTLAVNGLTPLLIARLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENDLPQKLLN LIEERRDGQSSGGQVLVKQMATSLLKALHINTVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Potri.007G070100 [exp]	0	1
AT4G31430			unknown protein		Potri.018G006200 [exp]	3.46	0.8492
AT1G22860			Vacuolar sorting protein 39 (....		Potri.001G081900 [exp]	5.38	0.8588
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Potri.010G177400 [exp]	5.83	0.8032
AT3G17850			Protein kinase superfamily pro...		Potri.012G044700 [exp]	7.34	0.8164
AT3G21290			dentin sialophosphoprotein-rel...		Potri.003G033100 [exp]	15.49	0.8505
AT2G43410		FPA	RNA binding (.1.2.3.4)		Potri.017G026600 [exp]	15.77	0.7718
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Potri.006G153100 [exp]	18.43	0.8157
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Potri.006G127100 [exp]	19.33	0.8140
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.001G123400 [exp]	22.18	0.8400
AT4G11270			Transducin/WD40 repeat-like su...		Potri.003G132900 [exp]	22.64	0.8159

Compare expression of checked genes

Potri.007G070100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.