Plant FIBer expression Database

Potri.007G070250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G50200 268 / 2e-83 ACD, ALATS Alanyl-tRNA synthetase (.1.2)
AT5G22800 75 / 5e-15 EMB86, EMB263, EMB1030 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1)
AT3G16565 44 / 6e-05 alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G094300
[exp]
291 / 2e-91 AT1G50200 1535 / 0.0 Alanyl-tRNA synthetase (.1.2)
Potri.009G141300
[exp]
68 / 1e-12 AT5G22800 1437 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017408
[exp]
275 / 2e-84 AT3G13530 1761 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1)
Lus10010210
[exp]
262 / 5e-81 AT1G50200 1511 / 0.0 Alanyl-tRNA synthetase (.1.2)
Lus10022640
[exp]
59 / 1e-09 AT5G22800 1455 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1)
Lus10003337
[exp]
59 / 1e-09 AT5G22800 855 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0040 tRNA_synt_II PF01411 tRNA-synt_2c tRNA synthetases class II (A)
CL0094 Peptidase_ME PF07973 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain
Representative CDS sequence
>Potri.007G070250.1 pacid=42765751 polypeptide=Potri.007G070250.1.p locus=Potri.007G070250 ID=Potri.007G070250.1.v4.1 annot-version=v4.1
ATTGATGTTGATGCTACATCAGCATTACACAAGAAAGGTATTTCTGCAACAGATGATTCCTTCAAATTTATTTGGTTTGAGGACCATGAAAGTGAAATAA
AGGCTATCTACACCGGTTCTGAGTTCTGGGAAAGTGCCTCTAGCGTTGGAGGCGGTATTGTTTTGGAGTCTACTAGTTTCTATGCTGAACAAGGTGGAAA
CATTTTTTATACTGGAATAATTGAAGGCCCTTTTGGTTCATTCCAAGTTTGCGATGTCCAAATTTTTGTTGGATTTATTCTTCATATTGGTTCTCTTACT
GGAGAAAGTGGCAGATTTTCTATGGGTGACAAAGTTATATGCAAGGTTGATTATGACAGGCGTAAACTCATTGCCCCCAACCATACCTATACACCCATGT
TGAACTTTGCTCTCAGGGAAGTGCTTGGCAATCATGTCGACCAGAAGGGATCAATTATTCTTCCTGAAAAACTAAGATTTGATTTTTCTCATGATAACAG
AACTCTATGGAGGTTAATGTTGATCCTACTTATAACAAATACGCGGGAAGCCAAGGCATTTGCTCTTTTATCTGAGGAGGGAATTGCGAAAGGAATTCAA
AAGATAACTGCTGTCACAACTGACTGTGCTTTTAAAGCAATGGAATTGGCACACTCACTTGAGCTGGAAGTTGATGATACATCTAAGGTGGATGAAAGTT
TGCTGGAAAAGAAAATAGCTTCTCTAAAAACTCGGGTGGACTCGACACTTATTCCTGCAGTCAAAAAAGCTCATATTAGGGCCAAGATTTCAGTACTG
AA sequence
>Potri.007G070250.1 pacid=42765751 polypeptide=Potri.007G070250.1.p locus=Potri.007G070250 ID=Potri.007G070250.1.v4.1 annot-version=v4.1
IDVDATSALHKKGISATDDSFKFIWFEDHESEIKAIYTGSEFWESASSVGGGIVLESTSFYAEQGGNIFYTGIIEGPFGSFQVCDVQIFVGFILHIGSLT
GESGRFSMGDKVICKVDYDRRKLIAPNHTYTPMLNFALREVLGNHVDQKGSIILPEKLRFDFSHDNRTLWRLMLILLITNTREAKAFALLSEEGIAKGIQ
KITAVTTDCAFKAMELAHSLELEVDDTSKVDESLLEKKIASLKTRVDSTLIPAVKKAHIRAKISVL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G50200 ACD, ALATS Alanyl-tRNA synthetase (.1.2) Potri.007G070250
[exp]
0 1
AT5G38760 Late embryogenesis abundant pr... Potri.004G107800
[exp]
1.00 0.7733 Pt-LEA1.4
Potri.006G070200
[exp]
1.41 0.7691
AT1G21750 ATPDI5, ATPDIL1... ARABIDOPSIS THALIANA PROTEIN D... Potri.005G179000
[exp]
2.44 0.7330 Pt-PDI.2
AT1G79250 AGC1.7 AGC kinase 1.7 (.1.2) Potri.010G175900
[exp]
4.24 0.7003
AT5G15110 Pectate lyase family protein (... Potri.008G148800
[exp]
5.47 0.7331
Potri.017G082950
[exp]
5.74 0.6818
AT4G14965 ATMAPR4 membrane-associated progestero... Potri.006G023801
[exp]
10.58 0.6410
AT4G29250 HXXXD-type acyl-transferase fa... Potri.018G032700
[exp]
11.83 0.6840
AT5G23960 ATTPS21 terpene synthase 21 (.1.2) Potri.019G023002
[exp]
14.83 0.6301
AT5G22900 ATCHX3 cation/H+ exchanger 3, ARABIDO... Potri.007G099000
[exp]
16.97 0.6318

Potri.007G070250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.