Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19780 770 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013425 [exp] 1016 / 0 AT3G19780 743 / 0.0 unknown protein Lus10040970 [exp] 700 / 0 AT3G19780 500 / 5e-157 unknown protein Lus10006653 [exp] 93 / 2e-22 AT3G19780 99 / 2e-25 unknown protein Lus10009463 [exp] 50 / 1e-05 AT1G33780 379 / 6e-132 Protein of unknown function (DUF179) (.1) Lus10001286 [exp] 49 / 1e-05 AT1G33780 386 / 9e-135 Protein of unknown function (DUF179) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin CL0172 [poplar] [flax] PF02622 [poplar] [flax] DUF179 Uncharacterized ACR, COG1678
Representative CDS sequence Show only first row Show all	>Potri.007G070400.3 pacid=42765774 polypeptide=Potri.007G070400.3.p locus=Potri.007G070400 ID=Potri.007G070400.3.v4.1 annot-version=v4.1 ATGAGTAAAATCAGTTTGATTATCTTCACTCTAGCTATCATAATCACACCATCATCGCCATCATCATCAACCGTTGATAGTGAATCAGACGGTGGAATCG GGCAATGGCGAATTCTCACCAAGCAAAATTTTTCTTCTCAGATAAGACTCCACCCTCATATCCTCCTCGTCGTCTCTGTTCCCTGGTCAGGTGTATCTCG GTCGCTAATGAAGGAAATAACGCATTTGGTTATTGATAAGAAAGAAGAATTCGGATCTTTAAAGTTGATGTATATGCACAAAAATAATGAAAAAATGTTA GCAGATGCTATTGGTGCTGTTGTTACAGATGAGATTACTCTCTTATACTACCATCATTCTTTGTATTATAAGTATAAAGGCAAATATCGGGCAAGGAATA TTTTGTCTTCCATTTTTCCTTATTTTTCGCTCTTGCCTGAAGAAATGCCATTAAAAAGATTGAGTGGTGAAGGGGATTTGAAGATGTTTATTGAATCGGC GGATAAGGCTGTGCTTTTGCTAGAATTTTGTGGGTGGACAGAGAAATTGATTGCTAGAGAGAAGAATAATGGTAGCAAAACTGGTTTTGGTGTGCAAGGT TTTGATGGAGAGAGTAATGTAATTTCAACACCCAGAGCGAAGGAAAACCAGAAGTTTCTAATGTTCTGGTTCCAGGGGACAGAAAATGGAGAGATGAAAT GTGGAATGGAAAATGGGCTCAGAGGAATTCCTTGGCTTGGGGAGTTTGCCTCAGTAAATGATAGTGCTCCTCTCCAGGAAACTGATTCCCAGGACAGTGT GGATCTAAAGCCCAGTGCTGTATCTTGTTCCCTTGAAGAATTTCAGAAATTTGATTCTTTCTTCTCAAGTTTCATGACTGATGTAAGGGAGTTCTTCCTG CCTCCTGAAAAGCATAGATTTGGTCTGGTTTCAGAGAAATCAATGCTCTCTCCTCTTGGTGTTGGAGATTCTGGTTCTTGGTCAGTAATGCTTTATTATA ATGGATGTCCAAGTTGTTCAAGTATTCTAAAAGAAGGGGATGACATGAAGAGAGTTCTACAAATGGAAAAGTCAATTGTCACAGAGCTGGAAGGTGATGG ACAAGATCTTGATTCCGCAATACCTTCAAACAAGCCATCAGTACTCCTGTTTGTGGACAGGTCATCTGACTTATCAGAAACAAGAATAAAGAGTAAGGAA GGTCTTGATGTATTTAGAGAACTAGCGTTGCACTACCAAATATCAAATCAGATGGGTCAGCAGAGCAACGACAAGTCTGAAGCATCCTCTGTCCAAGCTT CAACTGAATACCAAAGTGTATCTGGACACCCGAAATTAAAGCTATCTCCAACAGCTCAAAACATTAAATCAAAGGACAAAATGTCTATCATGATTGTAAA TGATGGCAAACCTGTCTTGTTAAATAGTATGGCTTCAGGTTTGGAAGGCAGTTCCTTGCATGAAATCTTGACTTACCTTCTTCAGAAAAAGGAGGAAGCT AAATTGAGTTCAGTTGCAAAGGAGGCTGGTTTCCAACTTCTTTCTGATGATTTTAACATTAAAGTAACAGATACATTACTGTCAGTAGCAGAGGTGGAGT CTGAACACATACCGTCTGATGAGAGCCTTGTTAGAACTAGTACTGATCTGGACAAAGATTCTGCCTCTAATAACCGTGAAGAATCCCAGTCCACTACTTC TCAGGATGATGAAGAGAAGTCTACTTATTCTGATGCAAGTAGACGCCTACCATCTATAGAACCTGCTCAATACATGTCAGATCATAAACCACCTACTTCA GAAGATGCAAGGGCAGAAAAAAAGGGTTCTTTCCAGTCAGACAAGTTGGGGGAAGAACAACGCAACTTTCAAAATTTCAAGGGTTCTTTTTTCTTTTGTG ATGGAAACTATCGATTACTAACAGCTTTGACTGGTGAGACCAGGATTCCATCCTTGGTAATAATTGATCCACTTTCACAGCAGCATTATGTCTTTACTAA ACATACAAATCTCAGCTACTCTTCACTGGAGGATTTTCTTCATGGATTTCTTAATGGAAATCTTGTCCCATATCAACGCTCTGAGTCTGAACCTGAAAGC CCGAGAGAAGAAACTCGCCCACCGTTTGTTAATATGGACTTCCATGAGGCAGATTCCATCTCTCAAGTTACAGCTCACACTTTCTCAGAACAGGTTCTTG GTTTTAATCAATCTGACAATGACTTTGCTGCAAATGCATGGAATGAGGATGTGCTGGTCCTTTTTAGCAATAGTTGGTGTGGATTTTGTCAGAGAATGGA ATTAATTGTTCGTGAAGTGCATCGAGCCATTAAAGGATACATAAACATGTTGAAGACTGGATCTAGGACTGGGGAAACAGTGCTCACTGATGATAACCTA AAGAAGCTTCCCAAAATCTTCTTAATGGATTGCACGATGAACGATTGCAGTTTGATTCTAAAATCAATGAATCAGAGGGAAGTTTATCCTACTCTGTTGT TATTTCCTGCAGAAAGTAAGAATACTGTCTGTTATGAAGGAGACATGGCTGTAGCTGATGTTATTACTTTTTTAGCTGACCGTGGAAGTAATTCTCGACA TCTCACCAGTGAAAATGGAATTCTATGGACTGTTGCTGAAAAAAAGGGTGCTAATTCACTGAAGGATGCTTCGACTGCTGCAGAAGATAAATCCCATGAA GTCCTTTTAAAGGACCTAACTCCGAAGAGAAATGTGGAATATGGTCAGACCAAATCTCACACATCCAAAGGCTTGCATGATACGGTATCTCAGGTGGCAG TTGGCTCAATCCTGGTCGCTACTGAAAAGCTTAACACACAACCATTTGACAAGTCAAGGATTCTCATCGTCAAGTCTGATCAAAATACAGGATTTCAAGG TCTGATTTACAATAAGCATTTGAGATGGGACACTCTGCAAGAACTGGAAGAAGAGTCAAAACTGCTAAAAGAGGCTCCTCTATCGTTTGGTGGTCCCCTT GTAACTCGCGGAATGCCTCTTGTTGCTCTGACTCGAAGAGCAGTCGGAGGTCAATACCCCGAAGTTGCACCGGGTACTTACTTTCTAGGCCAGTCGGCAA CACTACACGAAATTGAAGAGATCAGTTCAGGAAATCAATGCGTATCTGACTACTGGTTTTTCTTGGGGTTTTCGAGTTGGGGCTGGGAGCAGCTGTTCGA TGAGATTGCTCAAGGAGCTTGGAATTTAAGCGAGCACAAGAAGGAACCTTTAGACTGGCCATAA
AA sequence Show only first row Show all	>Potri.007G070400.3 pacid=42765774 polypeptide=Potri.007G070400.3.p locus=Potri.007G070400 ID=Potri.007G070400.3.v4.1 annot-version=v4.1 MSKISLIIFTLAIIITPSSPSSSTVDSESDGGIGQWRILTKQNFSSQIRLHPHILLVVSVPWSGVSRSLMKEITHLVIDKKEEFGSLKLMYMHKNNEKML ADAIGAVVTDEITLLYYHHSLYYKYKGKYRARNILSSIFPYFSLLPEEMPLKRLSGEGDLKMFIESADKAVLLLEFCGWTEKLIAREKNNGSKTGFGVQG FDGESNVISTPRAKENQKFLMFWFQGTENGEMKCGMENGLRGIPWLGEFASVNDSAPLQETDSQDSVDLKPSAVSCSLEEFQKFDSFFSSFMTDVREFFL PPEKHRFGLVSEKSMLSPLGVGDSGSWSVMLYYNGCPSCSSILKEGDDMKRVLQMEKSIVTELEGDGQDLDSAIPSNKPSVLLFVDRSSDLSETRIKSKE GLDVFRELALHYQISNQMGQQSNDKSEASSVQASTEYQSVSGHPKLKLSPTAQNIKSKDKMSIMIVNDGKPVLLNSMASGLEGSSLHEILTYLLQKKEEA KLSSVAKEAGFQLLSDDFNIKVTDTLLSVAEVESEHIPSDESLVRTSTDLDKDSASNNREESQSTTSQDDEEKSTYSDASRRLPSIEPAQYMSDHKPPTS EDARAEKKGSFQSDKLGEEQRNFQNFKGSFFFCDGNYRLLTALTGETRIPSLVIIDPLSQQHYVFTKHTNLSYSSLEDFLHGFLNGNLVPYQRSESEPES PREETRPPFVNMDFHEADSISQVTAHTFSEQVLGFNQSDNDFAANAWNEDVLVLFSNSWCGFCQRMELIVREVHRAIKGYINMLKTGSRTGETVLTDDNL KKLPKIFLMDCTMNDCSLILKSMNQREVYPTLLLFPAESKNTVCYEGDMAVADVITFLADRGSNSRHLTSENGILWTVAEKKGANSLKDASTAAEDKSHE VLLKDLTPKRNVEYGQTKSHTSKGLHDTVSQVAVGSILVATEKLNTQPFDKSRILIVKSDQNTGFQGLIYNKHLRWDTLQELEEESKLLKEAPLSFGGPL VTRGMPLVALTRRAVGGQYPEVAPGTYFLGQSATLHEIEEISSGNQCVSDYWFFLGFSSWGWEQLFDEIAQGAWNLSEHKKEPLDWP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19780			unknown protein		Potri.007G070400 [exp]	0	1
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Potri.003G039475 [exp]	5.56	0.8435
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Potri.001G463700 [exp]	9.79	0.8058
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Potri.005G125300 [exp]	10.24	0.8342
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.006G220900 [exp]	14.38	0.8016
AT2G30780			Tetratricopeptide repeat (TPR)...		Potri.016G119600 [exp]	14.42	0.7801
AT1G29370			Kinase-related protein of unkn...		Potri.005G202851 [exp]	18.97	0.7935
AT3G51050			FG-GAP repeat-containing prote...		Potri.007G017600 [exp]	24.24	0.7298
AT1G17680			tetratricopeptide repeat (TPR)...		Potri.013G128900 [exp]	26.40	0.7780
AT2G34750			RNA polymerase I specific tran...		Potri.007G065101 [exp]	27.71	0.7560
AT4G31930			Mitochondrial glycoprotein fam...		Potri.006G261601 [exp]	28.98	0.7666

Compare expression of checked genes

Potri.007G070400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.