Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27470 380 / 7e-132 seryl-tRNA synthetase / serine--tRNA ligase (.1) AT1G11870 168 / 7e-49 AtSRS, OVA7 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G094400 [exp] 449 / 2e-159 AT5G27470 731 / 0.0 seryl-tRNA synthetase / serine--tRNA ligase (.1) Potri.002G100300 [exp] 187 / 4e-56 AT1G11870 781 / 0.0 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010211 [exp] 376 / 2e-130 AT5G27470 745 / 0.0 seryl-tRNA synthetase / serine--tRNA ligase (.1) Lus10017409 [exp] 375 / 6e-130 AT5G27470 748 / 0.0 seryl-tRNA synthetase / serine--tRNA ligase (.1) Lus10010212 [exp] 303 / 5e-103 AT5G27470 474 / 4e-167 seryl-tRNA synthetase / serine--tRNA ligase (.1) Lus10010344 [exp] 170 / 5e-50 AT1G11870 786 / 0.0 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3) Lus10036477 [exp] 164 / 9e-48 AT1G11870 783 / 0.0 ovule abortion 7, Seryl-tRNA synthetase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF00587 [poplar] [flax] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T)
Representative CDS sequence Show only first row Show all	>Potri.007G070501.2 pacid=42766145 polypeptide=Potri.007G070501.2.p locus=Potri.007G070501 ID=Potri.007G070501.2.v4.1 annot-version=v4.1 ATGACTTGGTTCTGGATTGATAACCTACTTGATGTTCGACAGGTGACTGGTGAGGGAGATGACAAATATCTAATCGCTACAGCTGAACAACCACTATGTG CGTATCATCAAGATGATTGGATTCATCCCTCACAGTTACCAATCAGATATGCTGGGTGCTCGTCTTGTTTCCGTAAAGAGGCTGGTGCACATGGTCGTGA TACTCTCGGCATCTTTAGGGTTCATCAGTTTGAGAAAGTAGAGCAATTCTGCATTACCAGCCCAAATGGCAATGATTCTTGGGATATGCACGAGGAAATG ATCAAAAACTCCGAGGAGTTTTGCCAGGAGCTCAACATCCCCTATCAAGTTGTGGCAATAGTTTCTGGTGCTCTGAATGACGCAGCTGCAAAGAAGTATG ACTTGGAAGGCTGGTTTCCTGCTTCCAATACTTACAGAGAGCTAGTGTCGTGTTCAAATTGCACAGATTACCAGTCAAGAAGATTAGAAATTCGGTATGG GCAGAAAAAGAGCGAAGAGCAGGTAAAGAAGCAATATTGTCACTTGTTGAACTCTACCCTTACAGCAACGGAGAGGACCATTTGCTGCATCCTTGAGAAC TACCAGAAGGAAGATGGTGTGGGGATTCCAGAGCCATTAAGAAAACATATGAGCGGCAAAGAGTTTCTACCTTTCCAAAATAACCCTTCCATTGAAGGCA AGGGGAAGAAACTCAAGGCCTGGTCTTTTTTTCCTCCCTCATTTTAA
AA sequence Show only first row Show all	>Potri.007G070501.2 pacid=42766145 polypeptide=Potri.007G070501.2.p locus=Potri.007G070501 ID=Potri.007G070501.2.v4.1 annot-version=v4.1 MTWFWIDNLLDVRQVTGEGDDKYLIATAEQPLCAYHQDDWIHPSQLPIRYAGCSSCFRKEAGAHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWDMHEEM IKNSEEFCQELNIPYQVVAIVSGALNDAAAKKYDLEGWFPASNTYRELVSCSNCTDYQSRRLEIRYGQKKSEEQVKKQYCHLLNSTLTATERTICCILEN YQKEDGVGIPEPLRKHMSGKEFLPFQNNPSIEGKGKKLKAWSFFPPSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27470			seryl-tRNA synthetase / serine...		Potri.007G070501 [exp]	0	1
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.008G077700 [exp]	8.36	0.7784	Pt-PNFT3.4
AT2G26450			Plant invertase/pectin methyle...		Potri.018G051200 [exp]	9.53	0.7729
AT5G44265			Bifunctional inhibitor/lipid-t...		Potri.007G138400 [exp]	14.45	0.7318
AT5G10820			Major facilitator superfamily ...		Potri.018G017400 [exp]	15.87	0.6948
AT3G05610			Plant invertase/pectin methyle...		Potri.005G022900 [exp]	17.49	0.6171	PEF1.2
AT5G51010			Rubredoxin-like superfamily pr...		Potri.012G109700 [exp]	23.06	0.5644
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.009G083500 [exp]	23.45	0.5674
					Potri.005G078050 [exp]	27.45	0.5615
					Potri.002G025701 [exp]	30.39	0.5316
AT2G25185			Defensin-like (DEFL) family pr...		Potri.010G135666 [exp]	37.78	0.5055

Compare expression of checked genes

Potri.007G070501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.