Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18620 399 / 3e-139 DHHC-type zinc finger family protein (.1) AT4G22750 68 / 8e-13 DHHC-type zinc finger family protein (.1.2) AT3G09320 67 / 2e-12 DHHC-type zinc finger family protein (.1) AT4G22753 68 / 3e-12 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT5G04270 66 / 4e-12 DHHC-type zinc finger family protein (.1) AT3G04970 65 / 2e-11 DHHC-type zinc finger family protein (.1.2) AT3G56930 64 / 3e-11 DHHC-type zinc finger family protein (.1.2) AT5G50020 63 / 1e-10 DHHC-type zinc finger family protein (.1.2) AT4G24630 62 / 1e-10 DHHC-type zinc finger family protein (.1) AT3G60800 61 / 2e-10 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G087400 [exp] 70 / 3e-13 AT3G09320 409 / 3e-145 DHHC-type zinc finger family protein (.1) Potri.016G100200 [exp] 69 / 6e-13 AT3G09320 426 / 5e-152 DHHC-type zinc finger family protein (.1) Potri.010G226100 [exp] 67 / 1e-12 AT5G04270 296 / 3e-101 DHHC-type zinc finger family protein (.1) Potri.014G104000 [exp] 64 / 3e-11 AT4G00840 297 / 5e-101 DHHC-type zinc finger family protein (.1) Potri.002G147300 [exp] 62 / 7e-11 AT3G60800 441 / 3e-157 DHHC-type zinc finger family protein (.1) Potri.006G027500 [exp] 63 / 8e-11 AT5G05070 456 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.014G069200 [exp] 62 / 9e-11 AT3G60800 447 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.016G025200 [exp] 62 / 1e-10 AT5G05070 468 / 1e-164 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 62 / 2e-10 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013426 [exp] 447 / 3e-158 AT3G18620 422 / 2e-148 DHHC-type zinc finger family protein (.1) Lus10024377 [exp] 71 / 1e-13 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10010852 [exp] 71 / 1e-13 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10038701 [exp] 66 / 4e-12 AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) Lus10024561 [exp] 64 / 4e-11 AT3G60800 411 / 2e-145 DHHC-type zinc finger family protein (.1) Lus10032199 [exp] 64 / 5e-11 AT3G60800 409 / 2e-144 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 62 / 2e-10 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10010447 [exp] 62 / 3e-10 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2) Lus10020844 [exp] 61 / 3e-10 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2) Lus10033527 [exp] 61 / 4e-10 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.007G070600.11 pacid=42765286 polypeptide=Potri.007G070600.11.p locus=Potri.007G070600 ID=Potri.007G070600.11.v4.1 annot-version=v4.1 ATGGTTGACTCGAACCTTAACAAGGAGCATTTAGTAACAGTGGTTAGCGAGGATCATGAGACACCATGCTGGGGGTGCGGGTTGCATCTTCTTCACCCAC CTAATGCACCTGTTTTCAAGTGTGGCTGGTGTGGGGCAATAACAGATAAATATGAGTCGAAATGTGATCACAAGAATTATTGGTGGAGACACATGCGTGA CCGTTGCTTTGTATGTGTCCTCATCGGCTTCATTCTCTTTGTAATATGTGGTGGTGTGTGGGCAGTGTACCCTGTCATCTTCTCTATCAGTTATTTTTGT GGGATTTTCCATCTAACCATAACAGGTATCTTGTCAATAACTACTGTATTACTGTTTACTCTTACGGCCTTAAGAAGTGCTGGAACACCACCTCTAATAG AGTGGGGTGGCTACCCAGCTGTGGGAAAAAAACAGCTTGAAAACTACACCTTCTGTCACTACTGTTCAAAGCCCAAGTCACCGAGAACTCATCACTGCCG TACATGTGGAATCTGTGTACTGGACATGGATCATCACTGTCCTTTTATTGGAAATTGTGTTGGTGCAGCAAATCACCAACACTTCATTGCATTCCTTATA TCAGTTCTTGTCAGCACAATGTATGTTACAATCATGTCCGCATATGCTGTTTTGCATGTATGGCCTCCATTAACATACAGATACCTAGACCATTTTCGTG CTAGTGACAGATCTTTGGCTTGGAGAGCATTGCAGGATGTTGCTATTGCATTAGTAAGCTCTGCGGTGCTCCTTTCCACAAGAGGGCTTGTACTCGTCTA TCTTTTTGTTTCCAGTATTTCTTTAGAGATTGGAATAAGCGTTCTTCTGTGGCAGCAGTTCTGCTACATATATGAGGGACAAACTTACTTAAGCAGCTTA AGTATGCGGGGAGGTGACGAAGCTGGAGAAAAAGATTGCAAAAATCTTTTCCGTTTCTTCGGCTGCCCATATCCTGTTTTAAGATTCTTGCCAAATTTCT GGAATTCACCCAAGAGACACGAGAAGTGA
AA sequence Show only first row Show all	>Potri.007G070600.11 pacid=42765286 polypeptide=Potri.007G070600.11.p locus=Potri.007G070600 ID=Potri.007G070600.11.v4.1 annot-version=v4.1 MVDSNLNKEHLVTVVSEDHETPCWGCGLHLLHPPNAPVFKCGWCGAITDKYESKCDHKNYWWRHMRDRCFVCVLIGFILFVICGGVWAVYPVIFSISYFC GIFHLTITGILSITTVLLFTLTALRSAGTPPLIEWGGYPAVGKKQLENYTFCHYCSKPKSPRTHHCRTCGICVLDMDHHCPFIGNCVGAANHQHFIAFLI SVLVSTMYVTIMSAYAVLHVWPPLTYRYLDHFRASDRSLAWRALQDVAIALVSSAVLLSTRGLVLVYLFVSSISLEIGISVLLWQQFCYIYEGQTYLSSL SMRGGDEAGEKDCKNLFRFFGCPYPVLRFLPNFWNSPKRHEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18620			DHHC-type zinc finger family p...		Potri.007G070600 [exp]	0	1
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G002200 [exp]	4.89	0.7465	Pt-CNGC.2
AT5G57035			U-box domain-containing protei...		Potri.006G147000 [exp]	11.31	0.7232
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Potri.007G029400 [exp]	13.30	0.7283
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Potri.010G249200 [exp]	16.37	0.7353
AT2G45910			U-box domain-containing protei...		Potri.001G239100 [exp]	20.49	0.7065
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.002G175800 [exp]	22.64	0.6873
AT1G68580			agenet domain-containing prote...		Potri.010G126700 [exp]	24.00	0.7026
AT5G51340			Tetratricopeptide repeat (TPR)...		Potri.019G133000 [exp]	25.21	0.7193
AT1G34470			Protein of unknown function (D...		Potri.001G253100 [exp]	35.94	0.6705
AT1G67000			Protein kinase superfamily pro...		Potri.008G125500 [exp]	36.48	0.6982

Compare expression of checked genes

Potri.007G070600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.