Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14650 810 / 0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) AT1G14640 645 / 0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT5G06520 127 / 3e-30 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT5G12280 122 / 1e-29 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2) AT4G16200 86 / 3e-18 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT3G49130 81 / 2e-16 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1) AT5G06890 66 / 2e-13 Ubiquitin-like superfamily protein (.1) AT2G43960 65 / 1e-10 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G094600 [exp] 1109 / 0 AT1G14650 814 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Potri.001G356800 [exp] 44 / 0.0007 AT5G55100 420 / 6e-133 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Potri.007G067500 [exp] 41 / 0.0008 AT1G31340 224 / 1e-76 ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1, related to ubiquitin 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035958 [exp] 793 / 0 AT1G14650 886 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10013966 [exp] 710 / 0 AT1G14650 672 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10007278 [exp] 552 / 0 AT1G14650 512 / 3e-174 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10025704 [exp] 392 / 7e-131 AT1G14650 346 / 4e-114 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10025705 [exp] 369 / 5e-121 AT1G14650 365 / 5e-120 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10015391 [exp] 116 / 3e-30 AT1G14650 119 / 4e-32 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10043105 [exp] 45 / 0.0004 AT5G55100 504 / 1e-165 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Lus10032646 [exp] 44 / 0.0005 AT5G55100 499 / 3e-164 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0072 [poplar] [flax] PF01805 [poplar] [flax] Surp Surp module CL0072 [poplar] [flax] PF12230 [poplar] [flax] PRP21_like_P Pre-mRNA splicing factor PRP21 like protein
Representative CDS sequence Show only first row Show all	>Potri.007G070700.13 pacid=42766476 polypeptide=Potri.007G070700.13.p locus=Potri.007G070700 ID=Potri.007G070700.13.v4.1 annot-version=v4.1 ATGCCAGCCGCAGCAATCTTATCGCTTCCAGCACCTCCTGTTAATGGAGACGGGTCTCCTCCTCCACCATCCCAAGTGATAGAACAGCAGCCAAGGGAAG GTAGACCGGAAAATGAGGAGCAGAACAGAGCACCAGTTGCGACCCATACGAGAACCATTGGAATTATTCATCCTCCACCGGATATTAGGAGTATTGTTGA TAAAACCTCGCAGTTTGTGGCAAAAAATGGACCTGAGTTTGAGAAGAGGATTATTGCAAACAATGCTAATAATGCCAAGTTCAATTTTTTGAATCCATCG GATCCATATCATGCTTATTATCAGCATCGTTTGACAGAATTTCGTGCACAGAATCAAGCTCCTGGACAGCAGCCTACTTCACAGCCTGCGGATTCAGCTG CCCCTGATTCAGCTACAAAACCTGATTTGGCTACTGATTCAAATGAAGCAGCTACCAAACCGGATCCTGCAGCCCAGTTTAGACTACCTCCTCCTAAGGT TCTTGAACCCCCAGAAGCAGAGCAGTATACTGTTCGGCTTCCAGAAGGAATTACTGGAGAGGAACTTGATATTATTAAGCTCACGGCTCAGTTTGTAGCT CGAAATGGGCAAACATTCTTGACTGGATTGACGAACAGGGAGATGAACAATCCTCAGTTCCACTTTTTGAAGCCAACCCACAGCATGTTCACCTTTTTTA CTGGACTTGCTGATGCATATTCTAAAGTTTTGATGCCTCCCAGGGGTTTGACTGAGAAGCTGACAAAGAGTGTTGATGACATGACCACTGTGCTTGAAAG GTGCTTGCATCGCCTTGAATGGGAACGCTCACAAGAGCAGGCAAGACAGAAAGCTGAGGATGAGATTGAACAGGAGCGGATGCAAATGGCAATGATTGAT TGGCATGATTTTGTTGTGGTTGAGACTATAGACTTTGCAGACGATGAAGATGAGGACTTGCCCCCTCCAATGACACTTGAGGAGGTTATAAGGAGGAGCA AGATATCTGCTATGGATGAAGATGAAATCATTGAGCCTGGAAAGGAGATGGAGATGGAAATGGACGAGGAAGAGATGCAGCTAGTCGAGGAAGGCATGAG GATTGCAAGTATCGAAGAGAATGATGGTGAGAAAGACACAAGGACAAATGAGGAACCAGAACCACCTATGAGGATTGTGAAAAATTGGAAGAGACCTGAG GAGAGGATCCCTGCTGAAAGAGACCCAACAAAGTTTGTTGTTTCCCCTATCACTGGTGAGCTAATTCCCATTAGTGAGATGTCCGAGCATATGAGAATTT CCCTCATTGATCCTAAGTACAAGGAGCAAAAGGAAAGGATGTTTGCCAAGATTCGGGAAACTACTCTTGCTCAGGATGATGAGATCTCCCGAAACATAGT GGGACTTGCACGATTACGTCCTGATATCTTTGGCACAACGGAGGAAGAAGTTTCTAATGCTGTGAAGGCTGAAATTGAGAAGAAGAAAGATGAGCAGCCG AAGCAGGTCATATGGGATGGTCACTCGGGAAGCATTGGGCGCACTGCAAACCAAGCTATGTCTCAGAATGCTGGGGAGGATCAAAATGAAGCTGTTAATA ATGATGCAAGGAACCTTCCTGGCCCAGCAGCTCCCCCTCCCCGACCTGGTGTGCTGCCAGTCCGTCCCCTCCCTCCACCACCAGGACTGCAGTTGAATCT TCTTCGTGCACCTCCAAATACAGTTCAATATTCTGGTCCAGCTGGTGGGGCATATCCTGTACCTCCACAAAGGCCGGTCGGTATACCAATGATGCAGCCA AATTACCCCCCTCCTCCTCCAATGCAAATGGCATCTGGACAGCAACCCATTATGGTAAATCGACCACCCCCTATGCCTCCATCTATGTCTGGAAATCCAA GCATGCATGTGCCGCCTCCACCTGGATCTCAATATAATTCTATGGCAGTTCATCGACCTTTTGTCCCTCTTCATGTACCCCAACCCGGATTGCCTATGAT GCCTCCACCACCTCCTTTGCCTCAAGGAATGCCTCCACCACCTCCACCTGAGGATGCTCCTCCTCCACTTCCAGATGAGCCAGAGCCCAAGAGGCAGAGG CTTGATGATTCTGCGCTTGTTCCAGAAGATCAGTTTCTGGCTCAACATCTGGGACCTGTGCGCATCACTGTTGCCGTTCCCAATCTTGATGAAGGAAATC TCAAAGGGCAAGTTCTGGAGATTATGATGCAGTCCTTGTCCGAAACTGTTGGCAGCCTGAAGGAAAAAATTGCTGGAGAGATCCAACTTCCTGCCAACAA ACAGAAATTGAGCGGAAAAGCTGGTTTTCTCAAGGATAATATGTCACTTGCATATTACAATGTTGGACCAGGAGAGTCTCTGTCTCTCTCTTTGAGAGAG CGTGGTGGTAGAAAGAGATGA
AA sequence Show only first row Show all	>Potri.007G070700.13 pacid=42766476 polypeptide=Potri.007G070700.13.p locus=Potri.007G070700 ID=Potri.007G070700.13.v4.1 annot-version=v4.1 MPAAAILSLPAPPVNGDGSPPPPSQVIEQQPREGRPENEEQNRAPVATHTRTIGIIHPPPDIRSIVDKTSQFVAKNGPEFEKRIIANNANNAKFNFLNPS DPYHAYYQHRLTEFRAQNQAPGQQPTSQPADSAAPDSATKPDLATDSNEAATKPDPAAQFRLPPPKVLEPPEAEQYTVRLPEGITGEELDIIKLTAQFVA RNGQTFLTGLTNREMNNPQFHFLKPTHSMFTFFTGLADAYSKVLMPPRGLTEKLTKSVDDMTTVLERCLHRLEWERSQEQARQKAEDEIEQERMQMAMID WHDFVVVETIDFADDEDEDLPPPMTLEEVIRRSKISAMDEDEIIEPGKEMEMEMDEEEMQLVEEGMRIASIEENDGEKDTRTNEEPEPPMRIVKNWKRPE ERIPAERDPTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARLRPDIFGTTEEEVSNAVKAEIEKKKDEQP KQVIWDGHSGSIGRTANQAMSQNAGEDQNEAVNNDARNLPGPAAPPPRPGVLPVRPLPPPPGLQLNLLRAPPNTVQYSGPAGGAYPVPPQRPVGIPMMQP NYPPPPPMQMASGQQPIMVNRPPPMPPSMSGNPSMHVPPPPGSQYNSMAVHRPFVPLHVPQPGLPMMPPPPPLPQGMPPPPPPEDAPPPLPDEPEPKRQR LDDSALVPEDQFLAQHLGPVRITVAVPNLDEGNLKGQVLEIMMQSLSETVGSLKEKIAGEIQLPANKQKLSGKAGFLKDNMSLAYYNVGPGESLSLSLRE RGGRKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14650			SWAP (Suppressor-of-White-APri...		Potri.007G070700 [exp]	0	1
AT3G19895			RING/U-box superfamily protein...		Potri.008G085700 [exp]	1.00	0.9211
					Potri.009G040500 [exp]	3.00	0.9065
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.008G003600 [exp]	3.16	0.9105
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Potri.002G170600 [exp]	4.58	0.8862
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.003G223400 [exp]	5.47	0.9000
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.014G083700 [exp]	6.00	0.8846
AT3G20730			Tetratricopeptide repeat (TPR)...		Potri.007G068900 [exp]	7.93	0.8739
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.005G235400 [exp]	8.94	0.9030
AT5G61990			Pentatricopeptide repeat (PPR)...		Potri.015G105400 [exp]	11.48	0.8831
AT5G08430			SWIB/MDM2 domain;Plus-3;GYF (....		Potri.004G133600 [exp]	12.80	0.8579

Compare expression of checked genes

Potri.007G070700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.