Plant FIBer expression Database

Potri.007G071000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G50120 652 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040977
[exp]
716 / 0 AT1G50120 634 / 0.0 unknown protein
Lus10013430
[exp]
711 / 0 AT1G50120 625 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08737 Rgp1 Rgp1
Representative CDS sequence
>Potri.007G071000.10 pacid=42766221 polypeptide=Potri.007G071000.10.p locus=Potri.007G071000 ID=Potri.007G071000.10.v4.1 annot-version=v4.1
ATGTTGGCTTTTTTTGGGAGTGGGGGTTCTAGAAAGGTTGATAATTCTTCGGATGGTCGGAAGGATGAGCTTGTGCCAACACTAAAAGTGCAAACAGATA
AAGATGTGTATAGACCTGGTGATTCCATTCTTGTTACTATTGAGATATCCAACCCCAAAGATGGTGCCAGTGAAGATGTTATGTCTTCTCTGTTAATTGA
AAAGCTTGGTTTTGCGATTAGAGGTATTCAGAAGTTGGACAATCAATGGTTTGCCACTCAGAAGCCTTTGCCTGGGTCCAAACAGAGGAGAGGGGAACAT
GTTTTCATGGACTGCTCTACATCATCAATAGTTTCAAATCAGATTGTGTCCTCTGGTGCGACTAAAACATATGTGGTACGAACCTTGCTGCCTAGCATTA
TACCACCATCTTACAGGGGTGCTACCATTCGCTATATATACTATGTTGAGAGTACATTATCTGGACAACAGCTGATGCTGGACAATACTAACTCTCATAG
AGAGTCATCAAAAGATCTTCTTCAACTGGAAGATCGTATTCCGTTACAAATATGGGTGGCTCAGAAAGGCAATGGCCTAATAGTGGAAGAAGGTCAAAGT
GATGGGATTGTTCCACCTACAACCATTCAATTGGATATATACTGGAAAGAGATGGATGGAGACAATGAATGGGTAGCCAGAGCAAATGATTTAGATGATG
GAGTTGAGGAAGGGCATGAAAGCTTAAGGGATGAAATCTCATCTGTTTCTTCCTACAATCCCAATAGAGAAAGTATACACAAGACATTTGGAAGTTCTCT
GTCCCTGCAATCTGTGGCAAGGTCTTCAAATAAGGATGCGTCATTTACTGAAGGAGGACGCAGAAGTTTATCAACTCTGGCACTTCCTCGCCTGTCCGCA
GCTGAGGTTTTGTATGACTCTGGTGCAGATATGGCAGAACCTGATAAGTCGTCAGCTATGGTCTTTCCAAGCCAGCAGCTTAGAGATGACATGGCAGGGG
TATCTTATACACCAGGAACTGTATCTGTAAACAATGAACCTGCAGCATCAGAAGGCTTTATTCGTGGGAGGTCTTACAATATCAGGATGGATGATCATGT
TCTGTTGAGATTTTCCCCTAGGAACTCAGACTCCACTTATTACTTCAGTGATATGATAGGTGGAACTCTTACGTTTTTTCACGAAGAAGGAGCCAAGAAA
TGTCTTGAGGTTTCAATAACATTGGAAACTTCAGAGACTGTAAGTCGACGTTATATTCATCCTTCTCGCAAGAACTCCCCGACCATTACTAAGGTTCAAA
GCGATCATCATGAGGTTGTTGCAGATTTGGTGCAGACGAGCTTCCTGTTTTCAATTCCCATGGATGGGCCTATGTCTTTTTCCACATCCCATGTCTCTGT
GCAATGGGTTCTACGATTTGAATTTTTTACCACCCCAAAAAATGTGGACTGGACAAGATATGAGCATCCTCTTCTGATAGAAGGTAGAGACAAAAGTGAG
TGGGTTCTTCCTATAACAGTGCATGCACCCCCACCTAGGGCTTCAGCTGCCCATTCCCGAAATGAGAAGGGTTTTTCCTTAGAACCTTTGTGGGTTCGTA
CTTGA
AA sequence
>Potri.007G071000.10 pacid=42766221 polypeptide=Potri.007G071000.10.p locus=Potri.007G071000 ID=Potri.007G071000.10.v4.1 annot-version=v4.1
MLAFFGSGGSRKVDNSSDGRKDELVPTLKVQTDKDVYRPGDSILVTIEISNPKDGASEDVMSSLLIEKLGFAIRGIQKLDNQWFATQKPLPGSKQRRGEH
VFMDCSTSSIVSNQIVSSGATKTYVVRTLLPSIIPPSYRGATIRYIYYVESTLSGQQLMLDNTNSHRESSKDLLQLEDRIPLQIWVAQKGNGLIVEEGQS
DGIVPPTTIQLDIYWKEMDGDNEWVARANDLDDGVEEGHESLRDEISSVSSYNPNRESIHKTFGSSLSLQSVARSSNKDASFTEGGRRSLSTLALPRLSA
AEVLYDSGADMAEPDKSSAMVFPSQQLRDDMAGVSYTPGTVSVNNEPAASEGFIRGRSYNIRMDDHVLLRFSPRNSDSTYYFSDMIGGTLTFFHEEGAKK
CLEVSITLETSETVSRRYIHPSRKNSPTITKVQSDHHEVVADLVQTSFLFSIPMDGPMSFSTSHVSVQWVLRFEFFTTPKNVDWTRYEHPLLIEGRDKSE
WVLPITVHAPPPRASAAHSRNEKGFSLEPLWVRT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G50120 unknown protein Potri.007G071000
[exp]
0 1
AT3G53520 ATUXS1, UXS1 UDP-glucuronic acid decarboxyl... Potri.006G214000
[exp]
2.00 0.9538
AT3G05710 ATSYP43, SYP43 syntaxin of plants 43 (.1.2) Potri.013G011100
[exp]
3.87 0.9380 SYP41.2
AT5G05010 clathrin adaptor complexes med... Potri.012G125500
[exp]
4.24 0.9579
AT3G24530 AAA-type ATPase family protein... Potri.018G081000
[exp]
4.58 0.9330
AT2G40070 unknown protein Potri.010G190300
[exp]
5.38 0.9276
AT1G59610 DRP2B, CF1, ADL... Dynamin related protein 2B, dy... Potri.004G228400
[exp]
5.47 0.9274 Pt-DH1.1
AT5G11710 ENTH/VHS family protein (.1) Potri.006G234100
[exp]
5.47 0.9562
AT1G53290 Galactosyltransferase family p... Potri.011G111700
[exp]
5.83 0.9567
AT2G21410 VHA-A2 vacuolar proton ATPase A2 (.1) Potri.002G028600
[exp]
6.32 0.9466
AT3G45850 P-loop containing nucleoside t... Potri.009G026000
[exp]
8.12 0.9312

Potri.007G071000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.