Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48930 851 / 0 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT4G11050 598 / 0 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G64390 598 / 0 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT2G32990 560 / 0 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT2G44550 491 / 4e-169 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT2G44540 489 / 3e-168 ATGH9B9 glycosyl hydrolase 9B9 (.1) AT2G44560 470 / 7e-161 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT2G44570 462 / 1e-157 ATGH9B12 glycosyl hydrolase 9B12 (.1) AT4G23560 414 / 5e-139 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT4G09740 414 / 6e-139 ATGH9B14 glycosyl hydrolase 9B14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G139600 [exp] 609 / 0 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.001G092200 [exp] 607 / 0 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.014G157600 [exp] 572 / 0 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G356000 [exp] 549 / 0 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G098800 [exp] 420 / 5e-141 AT4G09740 669 / 0.0 glycosyl hydrolase 9B14 (.1) Potri.001G083200 [exp] 402 / 3e-134 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.006G219700 [exp] 401 / 4e-134 AT3G43860 689 / 0.0 glycosyl hydrolase 9A4 (.1) Potri.008G132700 [exp] 401 / 8e-134 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.010G109200 [exp] 398 / 1e-132 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010201 [exp] 930 / 0 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10017402 [exp] 858 / 0 AT1G48930 746 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10001833 [exp] 597 / 0 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10032377 [exp] 593 / 0 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10003888 [exp] 588 / 0 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10009724 [exp] 538 / 0 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10035316 [exp] 522 / 1e-180 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10033957 [exp] 502 / 3e-173 AT1G64390 797 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10017525 [exp] 416 / 1e-139 AT4G09740 645 / 0.0 glycosyl hydrolase 9B14 (.1) Lus10008208 [exp] 410 / 4e-137 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9 CL0203 [poplar] [flax] CBD PF09478 [poplar] [flax] CBM49 Carbohydrate binding domain CBM49
Representative CDS sequence Show only first row Show all	>Potri.007G071200.1 pacid=42765072 polypeptide=Potri.007G071200.1.p locus=Potri.007G071200 ID=Potri.007G071200.1.v4.1 annot-version=v4.1 ATGAAGAGCTTGAATTTTGGTGGATTATGTCTCTTATTAGGCGTACTTGTCCTAGAGGCACTCATTGCAGAAGGATTCAACTATGGTGATGCCCTTGATA AGACCTTAATGTTTTTTGAGGCACAAAGGTCAGGTAAGCTACCAGCCAATCAAAGAGTCAAGTGGAGGGGTGACTCCGGCCTCAAGGATGGGTACCTTCA AGGGGTAAACTTGGTGGGAGGGTACTATGATGCAGGAGATCATGTTAAGTTTGGACTGCCAATGGCATATACTGTGACAATGCTAGCTTGGGGAGCTATT GATTTCAGGAAGGAAATCACAGAGTTAGACCAGATGGGAAATGCTTTGTGGTCTCTTAGATGGGGTACTGACTACTTCATGAAGGCGCACACACAGCCTA ATGTTCTCTGGGCTCAGGTTGGGGATGGTGACTCTGATCACTATTGTTGGGAGAGAGCTGAAGACATGACTACTCCTAGGACTGCTTACAAGCTCGATCA GAATCATCCAGGTTCAGACCTTGCTGGAGAAACTGCTGCTGCCTTAGCTGCATCAGCTATAGCTTTCAAGCCTTACAATTCTTCCTACTCTAATTTGCTC TTACTTCATGCAAAACAGCTTTTCACATTTGCTGATAAATATAGAGGTCTATATGATGATTCTATTCAGAATGCTAAGCAATTCTACACTTCGTCAGGTT ACTCGGATGAGTTATTGTGGGCTGCTGCGTGGCTGTATCGGGCAACTGATGATGAGTACTTCCTAAAATACGTCGTAGACAATGCTGTATACATGGGCGG AACTGGATGGGCAGTCAAAGAATTCTCGTGGGACAACAAATATGCTGGTGTGCAAATCCTTCTTTCCCAGATACTTCTGGAAGGCCGTGGTGGCGCATAC ACTTCCACCTTGAAGCAATATCAGGCCAAAGCCAATTACTTTGCCTGTGCTTGTCTGCAAAAGAATGATGGCTACAACATCCACAAAACTCCTGGGGGCT TAATGTATGTCAGGGAATGGAACAATTTGCAATATGCCTCCTCTGCTGCATTTCTTCTTGCCGTCTACTCTGATTCTCTTTCTGCTGCAAATGCTAAGCT TACCTGTCCAGAAGGGCAGATCCCACCTCAGGCGCTCCTCGATTTTGCTAGGTCACAGGCTGACTATTTTCTTGGTAAAAACCCCAAGTCTATGAGCTAC TTAGTTGGATATGGACAGCAATATCCCATCCATGTTCACCATAGAGGTTCTTCCATTGCCTCTATATTTTCTCTTCAATCAACGGTTGAATGTGTTCAAG GATTTGAGAAATGGTATCGTCGTCCCGAGGGAAATCCTAATGTCATACATGGAGCTCTTGTGGGAGGCCCTGATCAGAATGATAACTTCTCTGATGACCG TTCCAACTACGAACAAACCGAGCCTACATTGTCTGGCTGTGCTCCTCTTGTTGGCCTGTTCTCTAAGCTGCAAAGTGTATCAGAAACCGCAGGCAACTAT CCTAAGAAAGCACCAGTTCCTCGTCCAACAACACCACATTCCTATCAAGAAACTCAAAAAACACAAGAACCCTATAGAAGTCATGAAGCCCCAGTGGAAT TCCTTCACTCAATAACCAAGACATGGACAGTTGGACCAACAACATATTACAGGCACAAGGTGATAATCAAAAACAAGTCTGAGAAGCCAATAAAAGACCT TAAATTGGTGATAGAAGACCTTTCAGGATCTATATGGGGTCTCAATCCAACACAACAGAGGAACACCTATGAGCTTCCTCAATGGCAGAAGGTCTTACAA CCTGGCTCAGAATGCAGCTTTGTTTATGTCCAAGGCGGCCCTCAGGCAAAGGTTACAGTTCAAAGCTACAACTGA
AA sequence Show only first row Show all	>Potri.007G071200.1 pacid=42765072 polypeptide=Potri.007G071200.1.p locus=Potri.007G071200 ID=Potri.007G071200.1.v4.1 annot-version=v4.1 MKSLNFGGLCLLLGVLVLEALIAEGFNYGDALDKTLMFFEAQRSGKLPANQRVKWRGDSGLKDGYLQGVNLVGGYYDAGDHVKFGLPMAYTVTMLAWGAI DFRKEITELDQMGNALWSLRWGTDYFMKAHTQPNVLWAQVGDGDSDHYCWERAEDMTTPRTAYKLDQNHPGSDLAGETAAALAASAIAFKPYNSSYSNLL LLHAKQLFTFADKYRGLYDDSIQNAKQFYTSSGYSDELLWAAAWLYRATDDEYFLKYVVDNAVYMGGTGWAVKEFSWDNKYAGVQILLSQILLEGRGGAY TSTLKQYQAKANYFACACLQKNDGYNIHKTPGGLMYVREWNNLQYASSAAFLLAVYSDSLSAANAKLTCPEGQIPPQALLDFARSQADYFLGKNPKSMSY LVGYGQQYPIHVHHRGSSIASIFSLQSTVECVQGFEKWYRRPEGNPNVIHGALVGGPDQNDNFSDDRSNYEQTEPTLSGCAPLVGLFSKLQSVSETAGNY PKKAPVPRPTTPHSYQETQKTQEPYRSHEAPVEFLHSITKTWTVGPTTYYRHKVIIKNKSEKPIKDLKLVIEDLSGSIWGLNPTQQRNTYELPQWQKVLQ PGSECSFVYVQGGPQAKVTVQSYN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G48930		ATGH9C1	glycosyl hydrolase 9C1 (.1)		Potri.007G071200 [exp]	0	1
					Potri.001G388600 [exp]	2.82	0.9231	PPO5
AT3G10710		RHS12	root hair specific 12 (.1)		Potri.010G247600 [exp]	4.89	0.8885
AT1G77020			DNAJ heat shock N-terminal dom...		Potri.005G185800 [exp]	6.63	0.9122
AT4G35160			O-methyltransferase family pro...		Potri.011G059500 [exp]	10.86	0.9226	Pt-OOMT2.14,FOMT7
AT1G54540			Late embryogenesis abundant (L...		Potri.017G154000 [exp]	11.09	0.9193
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.001G183400 [exp]	16.30	0.8794
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Potri.010G201200 [exp]	18.16	0.9096
					Potri.016G107750 [exp]	18.49	0.8191
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.009G022400 [exp]	19.28	0.9067
AT1G27040			Major facilitator superfamily ...		Potri.014G036200 [exp]	22.97	0.8979

Compare expression of checked genes

Potri.007G071200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.