Plant FIBer expression Database

Potri.007G071300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G23120 565 / 0 HCF136 HIGH CHLOROPHYLL FLUORESCENCE 136, photosystem II stability/assembly factor, chloroplast (HCF136) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G092950
[exp]
93 / 2e-23 AT5G23120 87 / 9e-22 HIGH CHLOROPHYLL FLUORESCENCE 136, photosystem II stability/assembly factor, chloroplast (HCF136) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010200
[exp]
555 / 0 AT5G23120 564 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 136, photosystem II stability/assembly factor, chloroplast (HCF136) (.1)
Lus10017401
[exp]
550 / 0 AT5G23120 563 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 136, photosystem II stability/assembly factor, chloroplast (HCF136) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0434 Sialidase PF14870 PSII_BNR Photosynthesis system II assembly factor YCF48
Representative CDS sequence
>Potri.007G071300.4 pacid=42766240 polypeptide=Potri.007G071300.4.p locus=Potri.007G071300 ID=Potri.007G071300.4.v4.1 annot-version=v4.1
ATGGCCTCCCTAACTTCTCCAACATTCACAACCAACACACGTTGTCTTCAGAGACCACAGAATTCTCACTCTCCTTCTCAACAACCTCGTTTATCACAAA
GACCAGAACTGAACCGCAGGCATTTCATATCTCAAACAGCTTCACTTTCATCACTTCCTTTACTTTCTCCTCTCATTCTTAACCCCCAACAAGCCAATGC
TGCAGCTGAAGATTCTCTTTCCGAATGGGAAAGAGTTTACCTTCCCATTGATCCTGGTGTTGTGCTCCTTGACATTGCCTTTGTTCCTGATGACACGAAC
CATGGGTTCTTGTTGGGGACAAGGCAGACAATCATGGAAACTAAAGATGGTGGAAATACTTGGGTCCAGCGGTCAATACCTTCGGCAGAAGATGAGGATT
TTAACTATAGGTTTAATTCGATTAGTTTTAAGGGGAAGGAAGGATGGATTGTTGGAAAGCCTGCAATTCTGCTGTACACTGCAGATTCCGGAGAAACATG
GGAGAGAATACCATTAAGTGCTCAACTCCCTGGTGATATGGTCTATATAAAGGCAACTGGAGAAAAGAGTGCGGAGATGGTAACAGACGAAGGTGCAATA
TATATCACATCAAATAGGGGTTATAACTGGAGGGCTGCAGTTCAGGAGTCTGTTTCGGCAACTCTTAACAGAACAGTTTCTAGTGGTATTAGTGGTGCAA
GTTACTATACAGGGACTTTTAATACTGTGAATCGCTCTCCAAATGGAAACTATGTTGCCGTCTCAAGCCGTGGTAACTTCTATCTGACGTGGGAGCCTGG
TCAGGCATTCTGGCAGCCGCATAACAGAGCAATTGCAAGAAGAATTCAAAACATGGGATGGAGGGCGGATGGTGGGCTCTGGCTTCTTGTTCGTGGAGGG
GGGCTTTATCTTAGCAAAGGCACTGGGATATCAGAGGAGTTTGAAGAAATTCCAGTGCAAAGTAGGGGGTTTGGCATTCTTGATGTAGGGTACCGTTCAA
AGGAAGAGGCTTGGGCAGCAGGAGGCAGTGGGGTTCTGTTGAGAACTACCAATGGTGGCAAGACATGGACCCGTGACAAAGCAGCTGATAATATCGCTGC
AAATCTTTACTCGGTGAAGTTTATTGATGACAAGAAAGGATTTGTTCTGGGAAATGATGGAGTCCTGCTTCGGTATCTTGGATAA
AA sequence
>Potri.007G071300.4 pacid=42766240 polypeptide=Potri.007G071300.4.p locus=Potri.007G071300 ID=Potri.007G071300.4.v4.1 annot-version=v4.1
MASLTSPTFTTNTRCLQRPQNSHSPSQQPRLSQRPELNRRHFISQTASLSSLPLLSPLILNPQQANAAAEDSLSEWERVYLPIDPGVVLLDIAFVPDDTN
HGFLLGTRQTIMETKDGGNTWVQRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTADSGETWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAI
YITSNRGYNWRAAVQESVSATLNRTVSSGISGASYYTGTFNTVNRSPNGNYVAVSSRGNFYLTWEPGQAFWQPHNRAIARRIQNMGWRADGGLWLLVRGG
GLYLSKGTGISEEFEEIPVQSRGFGILDVGYRSKEEAWAAGGSGVLLRTTNGGKTWTRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G23120 HCF136 HIGH CHLOROPHYLL FLUORESCENCE ... Potri.007G071300
[exp]
0 1
AT3G52150 RNA-binding (RRM/RBD/RNP motif... Potri.009G065900
[exp]
1.41 0.9904
AT4G17560 Ribosomal protein L19 family p... Potri.001G152200
[exp]
1.73 0.9883
AT5G54600 Translation protein SH3-like f... Potri.001G415400
[exp]
3.16 0.9884
AT2G43030 Ribosomal protein L3 family pr... Potri.013G070100
[exp]
3.74 0.9852
AT3G13120 Ribosomal protein S10p/S20e fa... Potri.011G092800
[exp]
5.65 0.9870
AT1G78630 EMB1473 embryo defective 1473, Ribosom... Potri.001G384600
[exp]
6.32 0.9852
AT4G20360 AtRab8D, AtRABE... RAB GTPase homolog E1B (.1) Potri.003G121600
[exp]
6.70 0.9857
AT3G27830 RPL12-A ribosomal protein L12-A (.1) Potri.001G346100
[exp]
7.74 0.9856 Pt-RPL12.6
AT3G13120 Ribosomal protein S10p/S20e fa... Potri.001G365600
[exp]
7.74 0.9821
AT5G42070 unknown protein Potri.001G089500
[exp]
8.24 0.9787

Potri.007G071300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.