Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23130 292 / 1e-95 Peptidoglycan-binding LysM domain-containing protein (.1) AT5G08200 285 / 7e-93 peptidoglycan-binding LysM domain-containing protein (.1) AT1G55000 42 / 0.0004 peptidoglycan-binding LysM domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G092800 [exp] 560 / 0 AT5G23130 284 / 1e-92 Peptidoglycan-binding LysM domain-containing protein (.1) Potri.012G036600 [exp] 300 / 2e-99 AT5G23130 275 / 6e-90 Peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G032100 [exp] 43 / 7e-05 AT1G55000 188 / 3e-61 peptidoglycan-binding LysM domain-containing protein (.1.2.3) Potri.013G021600 [exp] 41 / 0.0008 AT1G55000 280 / 2e-94 peptidoglycan-binding LysM domain-containing protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010198 [exp] 285 / 8e-92 AT5G08200 277 / 9e-89 peptidoglycan-binding LysM domain-containing protein (.1) Lus10040979 [exp] 263 / 6e-85 AT5G08200 257 / 1e-82 peptidoglycan-binding LysM domain-containing protein (.1) Lus10013432 [exp] 260 / 7e-84 AT5G23130 248 / 2e-79 Peptidoglycan-binding LysM domain-containing protein (.1) Lus10017399 [exp] 241 / 4e-77 AT5G08200 227 / 4e-72 peptidoglycan-binding LysM domain-containing protein (.1) Lus10004477 [exp] 46 / 3e-05 AT1G55000 327 / 5e-114 peptidoglycan-binding LysM domain-containing protein (.1.2.3) Lus10029925 [exp] 45 / 7e-05 AT1G55000 320 / 1e-111 peptidoglycan-binding LysM domain-containing protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G071500.1 pacid=42765461 polypeptide=Potri.007G071500.1.p locus=Potri.007G071500 ID=Potri.007G071500.1.v4.1 annot-version=v4.1 ATGATGAAGATTCAGATGGAAAGTAACGGCAGTCAGCATCACCATCTGCATCAGGATCAGAATTTCAGGTACAGTCAGTTTTCAAACGGCGGCGTTTATG ATTATCATGATAATCACAACGATGAGATAGATCAAGTTTTGCAATTCTATAGTAATTATAACAAGAGCGAAATTAATGGCAAAGGGAAGGGTCGAATTAT ACTGCCGTCGCCACCATCAACTACCACAGCAACGTCGTCTGCTTCTACCTCTTCAAATGTTGGCAGCGGATTTATTGAACACCCGGTTTCCAAGCTGGAT ACTCTTGCCGGTGTCGCAATAAAATACGGGGTGGAGGTGGCTGACATAAAAAAGATGAATGGCTTGGTTACAGATCTTCAAATGTTTGCTCTCAAGTCAC TCCAGATTCCATTACCTGGAAGACATCCACCCTCATTGTTCTTATCAAATGGTTTTGATACTCCACGACTGAGCAGTTATGAACAGACCCCGCCACGAGG TTTGCAGTCTGATGTCTTTGATTCATTCCAGTATTTGAATCCCAAATCTTCGCAGCTTAAGGTTTCTCCAGCTATGAGCTCTTTACAAGGTTACTACGGG CTTAAGCCGAAAGATCAAAAGAACACATCTAAAGGTTTTGAGATGGCAGTCAACAGGAATGGATATTCTCATCATCTGGAAGGTGGTCTGTATCTTAAAC CATCACCAGCTTCCCACCCGCCTTTGTGCCTCCATCGGAAAACTAGAAGCTGGGTTAATGAGTTACTTGACGAGAACAATGAACTGGTTAACAAATTATT CCTTGATGATGCAAAGGAAATTGAGTCTGAGAAATTGGTGAGGCGTCGTCAGAAATCAGAAACTGATTTCACTTCCATCGACTCTGACTTGCTGATTAGA GAGGAAAACAGCGGGGCTGCTTTCTCGACAATCACTGGAAAATGCTTAGCCCTCAGACCCAAAGCAGGAAACCGAGCCACAAAAAATGTTGAGGCAGCTG GTTTGATCTCTGCACAATCAGGTCCCAGAGATGTGGCTGATGGATTTCCCATGGTTAGGAAGTCATCAAGCACGCCTAGTTTGAATGATCAAGACAGTAT TAGTTCTTCCATCTGGCCAACATCGAAGTGGAGTTTGAAGCCAGATTTGCAAGCCTTGTCTGCTTCAACCATAACGAGACCAATCTTTGATGGATTGCCA AAACCAACAACTGGTCGGAAAAACAAAACAGCGCTCGATTAG
AA sequence Show only first row Show all	>Potri.007G071500.1 pacid=42765461 polypeptide=Potri.007G071500.1.p locus=Potri.007G071500 ID=Potri.007G071500.1.v4.1 annot-version=v4.1 MMKIQMESNGSQHHHLHQDQNFRYSQFSNGGVYDYHDNHNDEIDQVLQFYSNYNKSEINGKGKGRIILPSPPSTTTATSSASTSSNVGSGFIEHPVSKLD TLAGVAIKYGVEVADIKKMNGLVTDLQMFALKSLQIPLPGRHPPSLFLSNGFDTPRLSSYEQTPPRGLQSDVFDSFQYLNPKSSQLKVSPAMSSLQGYYG LKPKDQKNTSKGFEMAVNRNGYSHHLEGGLYLKPSPASHPPLCLHRKTRSWVNELLDENNELVNKLFLDDAKEIESEKLVRRRQKSETDFTSIDSDLLIR EENSGAAFSTITGKCLALRPKAGNRATKNVEAAGLISAQSGPRDVADGFPMVRKSSSTPSLNDQDSISSSIWPTSKWSLKPDLQALSASTITRPIFDGLP KPTTGRKNKTALD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23130			Peptidoglycan-binding LysM dom...		Potri.007G071500 [exp]	0	1
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Potri.001G361700 [exp]	1.41	0.8225
AT5G46910			Transcription factor jumonji (...		Potri.003G096100 [exp]	6.32	0.7525
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Potri.007G134800 [exp]	8.12	0.7693	PtrGrx2
AT1G21660			Chaperone DnaJ-domain superfam...		Potri.005G181700 [exp]	15.87	0.7116
AT1G78280			transferases, transferring gly...		Potri.002G099400 [exp]	17.88	0.7191
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G110500 [exp]	18.70	0.7103	DREB65
AT5G41590			Protein of unknown function (D...		Potri.003G133200 [exp]	22.44	0.7347
AT4G20400		PKDM7B, JMJ14	JUMONJI 14 (.1.2)		Potri.011G155100 [exp]	31.11	0.6475
AT1G71360			Galactose-binding protein (.1)		Potri.019G068900 [exp]	31.22	0.7209
AT3G11760			unknown protein		Potri.018G027200 [exp]	32.49	0.7111

Compare expression of checked genes

Potri.007G071500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.