Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23150 484 / 1e-146 HUA2 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) AT5G08230 395 / 2e-114 Tudor/PWWP/MBT domain-containing protein (.1) AT3G63070 226 / 1e-59 Tudor/PWWP/MBT domain-containing protein (.1) AT2G48160 216 / 1e-56 Tudor/PWWP/MBT domain-containing protein (.1) AT5G10800 49 / 4e-05 RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G092700 [exp] 1831 / 0 AT5G23150 478 / 2e-144 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Potri.014G138700 [exp] 249 / 1e-66 AT3G63070 400 / 5e-117 Tudor/PWWP/MBT domain-containing protein (.1) Potri.004G130600 [exp] 47 / 9e-05 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013433 [exp] 845 / 0 AT5G23150 466 / 2e-140 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10040980 [exp] 818 / 0 AT5G23150 480 / 1e-145 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10017398 [exp] 768 / 0 AT5G23150 432 / 5e-128 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10010197 [exp] 765 / 0 AT5G23150 445 / 2e-132 ENHANCER OF AG-4 2, Tudor/PWWP/MBT domain-containing protein (.1) Lus10028004 [exp] 177 / 9e-45 AT2G48160 371 / 5e-109 Tudor/PWWP/MBT domain-containing protein (.1) Lus10042690 [exp] 169 / 7e-42 AT2G48160 282 / 1e-77 Tudor/PWWP/MBT domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF04818 [poplar] [flax] CID CID domain
Representative CDS sequence Show only first row Show all	>Potri.007G071600.4 pacid=42764980 polypeptide=Potri.007G071600.4.p locus=Potri.007G071600 ID=Potri.007G071600.4.v4.1 annot-version=v4.1 ATGGCTCCGGGGCGTAAAAAGGGAGCGAATAAGAAGAAACTTCAGTTGCGTTTGGGTGATCTTGTTCTTGCTAAAGTCAAGGGTTACCCTTCTTGGCCTG CCAAGATTAGCCGGCCTGAAGATTGGAAGCGAGTCGCTGATGCTAAGAAAGTTTTTGTCTATTTTTTTGGAACTCAAGAAATTGCTTTTGTTGCCCCTTC TGATATTCAGGTATTCACAAATGAAGTGAAGAATAAATTGTCAGCTCGGTGTCAGAGTAAGAAAGATAGGTTCTTTTCCCAAGCTGTGAAGGAAATCTGT GCAGCTTTTGAAGAGTTGCAGAAGGGAAAGTCAAGTGGATTGGGAGATAATACTGATAGATCAGCACTAGGATCTGAGGGTCAATCTGTTGACTCAATGG AAGAGGATGGGGCAGGGGATGACTTAAATGAGGGGATGGGTAAAGTTGGACAAAGTGGAGTGATGTGGGATTCAGGACGTGAATTTAGTTCTAAGTTAGA GCATTGCTCCAGTAGACGAGGTGAAGCGGGCTCTGAAGGTATGAAGCCTTCTGTTTCATGTGACACTGATGACAGTTCATCCCCAGGTATTTCTTCTGAA AATAAGGTTAAAACATTTGATGGTGAACAACCACAAGAGGTATTATCTGCTTCCAGTTTGGATAATGTTTCCTTTGTAAAGGATGAAGCCTCTTGTAATG GAAATCTGGATGTTAATTGCATGAATAACCTGTGTAATGGTGAGGAGGCAAGGACAAATCCTCATGAGTCTAAGACAGTGGTTTCTGGGGCAGACAGAAA ATTGGAATGTGATTCTAGGGAGCAAGTGAAAGGTGGAGAAAAAGGCAAGCATGCTAGTGGCAGAATAAGAGATTCCCCCCCAGGTCCTCCTAAATCAGAT TCAGGAGCCAATGGTGGTAGAAAAGCAGAACTATCAGAAGCCAAAAAGGATACTATTATGGTGTTCAATGATATACACGAAAATAAGGTCTTTCAAAAGA AAAGGCGTGCCCAACCTGAACATGGAAAATCTGAGCTTGAAACGACTGAAACTACAAATCCTGCTAAGAAATTAAAGCGTGTAGACATGGAAGATGATGT TACCAAGGGACCCCTCTTAGAAAACATGAGTATTTCACCAAGCTTGAATGTAGTCGATGACAAAGCAGTCAAACAGCCTGTGGCACATGGGAAAAGAGAA ATCCTTTTGGCATTAAGAGCCCAAAGTGGTAAAGTTAAATCTGATGCTTTTGCCCAAATAGGTAAAGTGAAATCTAATCTTTCTTCTCAATTAGGTAAGT TTAAACCTGGTACATCTGCCAAGACGAGTAAAGTTGATTGTGATGCATCTGCCCAGACAGTTAAAGTCAAAAGTGATCCTCCTGCACAATGGGGTAACAC TAATACTGATGCATCTGCACAAATAAGCAAAGTTAAACTTGATGCATCTGCTGAAATTGGCAAAGCTAAACCTGATGCTTCTGATCCAATGAGTAAAGTT AAATCCGATGTTTCAAATGATGAAACTGTGCTGCCTGTATTAAAACGACGTAAACGGGCAATGGAGGCGATGTGTGACGCTGCTGCTCTCAATTCCGATG ACAGAATGGAGAAAAATGCTCTTGAGCTAAATAGTGATTTAGCTTCTATCAATACGAGAGTTTCTGTCACCCAACAGCCCAAAAGGCGAAGAGCTGTTTG CCTTTATGATGGCGACAATGAAGATGAAGAACCCAAAACTCCTGTTCATGGAGGAGCTGACAAAAATGTCAGAGCACATGTGTCTGTTTCAGACACTTCC AAGAGAACTAATGTGCACGTTGAAAGTTCTGTTAATCAAGAACACAGAAGTTCTATTAATGCTCAGACAAGTTTGAGGGATTCTACTGGATTAGAGAATA GCCATTCCAAGGAATCATCTTTGCTGATGCAGAACTATCCTCTTTCACCTAGCTGTCCAAAAACTGCAAAGAGGAATGATATTCGTGTCTCTCCAAGTCC TGGCAAATCAGAGTCCGAGCAGATACTGACCAAGGAGGCCAAACCAATCATAACTACCCCTAAGAGGTCTCCTCATCTGCTTCCTGCCACCAAACCAGTT GTGGAACAGCATAAAGCTACCAAGCCCTCCATTAAAGTTTCCACACTGGGCATTCAAAAGAGGGCCCAGGCTGGACCTGGCAAGGTTTCAGGTCCTGTTT TGGATAGTTCAAACACCTCTCAAAATCATGTGCCAAGTCAAAAAAGTAGAGCAGCTTTTTCTGGGGATTGGCCAAAAAGTACTCCTAAAGCAACTTCACA AATGAGTGATCCTACTGTTCCAATGTGTGCTCCATCAGAACTGGAAGTTGGTATGGATGATAGAAGCAGCTTTTTGGTCGATTCTAAGACTCTAGATTCT GTTACATCTATGAAACATCTCATTGCTGCTGCTCAAGCAAAAAGGAGACAAGCTCACTCACAACCTTTTCCTCATGGAAACCCTGCTTTTATAGCTCTTA ACGATGCTCAGGGAAGGAGCCCAAGCTCCTCACCGGGCCAAAATTTTTTATCTGGTACTAGCAATGCTGTACAGGCAGATATGCAAGGCTTCTATCATAA TACAAATTTAGTTTCTCCATCTTCACATGGTCACCAATCAGCGTCACACAGCCAAGTGGAAGCTGAAGAAATTGAGGAGCAAAGAGTTAGTTCAGGACAG AGGGCTGCTGGAGGTTCATTGAGTGGTGGTACTGAAGCTGCTGTGGCTCGTGATGCTTTTGAAGGGATGATAGAGACTTTATCAAGGACAAAAGAAAGTA TTGGACGTGCAACTCGCCTTGCCATTGATTGTGCCAAGTATGGCATTGCAAATGAGGTTGTAGAACTTCTAATCCGAAAATTGGAAAGTGAGCCTAGTTT CCACCGCAAAGTGGACTTATTTTTTCTTGTAGATTCCATCACCCAGTGTTCACATAATCAAAAAGGTATCGCTGGAGCTTTGTATGTCCCTACGGTGCAA GCAGCCTTACCACGCCTTGTTGGTGCTGCTGCTCCACCAGGAGCCAGTGCTCGGGAAAATCGTCGTCAGTGTTTAAAGGTTTTAAGGTTGTGGCTTGAGA GGAAAATCTTTCCAGAATCTGTTTTGAGGCACTATATAGATGGTATTGGAGGTTCAAATGATGATGCCTCTGCTGGATTTTCCCTTCGACGTCCATCCCA ATCTGAGCGAGCTATAGATGATCCAATCAGGGAAATGGAAGGCATGCATGTAGATGAATATGGCAGTAATGCCACATTTCAGTTGCCTGGGCTTTTATCT TCTCATGTGTTCGAGGATGATGATGATGATGATGACTTTCCGAGCAGTCCTTTTAAGGAAGTTAATGTTGTGTTAGGAGTTACAGAATCAACCCATGCTC TAGGAGAGAGAGAAACATTTACTGCGACTGCAAGTGACAGGCGCCATTGCATCTTAGAGGATGTGGATGTTGAACTTGAAATGGAAGATGTGTCTGGACA CCCAAAGGATGAAAGACCCTCATCCATAGGTGTTTTTTTTGAAATGGAAGCACAGCAGCATTACTCAGATAGGTTACCAGAACCAGCATTAAATGATTCT GTCCATTTGTTGCCTCTACCAGATGGTTCTCCACCACCGCCTCCTGATTCTCCTCCTCCACCTCCGCCTTTGCCTTCCTCTCCACCGCCGCCGCCGCCAC CACCACCTCCACCACTTCCACCTCAACTCTCAACATCTTTGTCACCGCCGCCTCCACCTCCACCTCCACCTCCACCTCTTCCGTCACAACCACCACCTCC TCTCCCCCCTGTGCCACCTTCAGCTCCTCTGCCTACTGTGGTACCACAACCATCTGTACCAACTCAATCTTCGTTACTAGCAAAACCAATACGACCATCT CAGTCATCTGTACAGTCCTCTCCTCATTTGGCATATCAATCAGCTGTACCTCATGAATACTGTACTACACCCAATAGTAATCAAATTGTCCAAATGGCTG GAAGTACTCCTCATGGGAATCACATGTTCTTAAATCCTCAAGCTCCTCAACAAAACCCACATTTTCAGCCAGTTAATGCACCTTTTGCACAAAGACCGCT GCATTCAAACCTACCACAAAATGCATCAGGTCACTTCTCATTCACGACGCCTCCAATTCAGCAGCTTCCTTATCCCCGTCCATACTCTATGCCATCACAT CCAGATGGTCGGCCACGATTTTCCACTGATGAACAGTGGAGGATGCCTTCAAGCGAATATCCAGATAATCATCCTGGTGCATGGATGGGTGGAAGAAATC CATCTTATGCAGGCCCTTCTTTTGGCCAGGAAGGTCACTTTCGGCCACCACCTCCAAATAATATGGGTTTTCAGGTTGCTCCCTCCAACAAGGTACCTGC TGGAGCTTCCATTCCAGGTCATGGTGTTACACAGATGTTGCCATGTAGACCAGACATGCCTGCCCTTAACTGCTGGAGGCCAGCATAA
AA sequence Show only first row Show all	>Potri.007G071600.4 pacid=42764980 polypeptide=Potri.007G071600.4.p locus=Potri.007G071600 ID=Potri.007G071600.4.v4.1 annot-version=v4.1 MAPGRKKGANKKKLQLRLGDLVLAKVKGYPSWPAKISRPEDWKRVADAKKVFVYFFGTQEIAFVAPSDIQVFTNEVKNKLSARCQSKKDRFFSQAVKEIC AAFEELQKGKSSGLGDNTDRSALGSEGQSVDSMEEDGAGDDLNEGMGKVGQSGVMWDSGREFSSKLEHCSSRRGEAGSEGMKPSVSCDTDDSSSPGISSE NKVKTFDGEQPQEVLSASSLDNVSFVKDEASCNGNLDVNCMNNLCNGEEARTNPHESKTVVSGADRKLECDSREQVKGGEKGKHASGRIRDSPPGPPKSD SGANGGRKAELSEAKKDTIMVFNDIHENKVFQKKRRAQPEHGKSELETTETTNPAKKLKRVDMEDDVTKGPLLENMSISPSLNVVDDKAVKQPVAHGKRE ILLALRAQSGKVKSDAFAQIGKVKSNLSSQLGKFKPGTSAKTSKVDCDASAQTVKVKSDPPAQWGNTNTDASAQISKVKLDASAEIGKAKPDASDPMSKV KSDVSNDETVLPVLKRRKRAMEAMCDAAALNSDDRMEKNALELNSDLASINTRVSVTQQPKRRRAVCLYDGDNEDEEPKTPVHGGADKNVRAHVSVSDTS KRTNVHVESSVNQEHRSSINAQTSLRDSTGLENSHSKESSLLMQNYPLSPSCPKTAKRNDIRVSPSPGKSESEQILTKEAKPIITTPKRSPHLLPATKPV VEQHKATKPSIKVSTLGIQKRAQAGPGKVSGPVLDSSNTSQNHVPSQKSRAAFSGDWPKSTPKATSQMSDPTVPMCAPSELEVGMDDRSSFLVDSKTLDS VTSMKHLIAAAQAKRRQAHSQPFPHGNPAFIALNDAQGRSPSSSPGQNFLSGTSNAVQADMQGFYHNTNLVSPSSHGHQSASHSQVEAEEIEEQRVSSGQ RAAGGSLSGGTEAAVARDAFEGMIETLSRTKESIGRATRLAIDCAKYGIANEVVELLIRKLESEPSFHRKVDLFFLVDSITQCSHNQKGIAGALYVPTVQ AALPRLVGAAAPPGASARENRRQCLKVLRLWLERKIFPESVLRHYIDGIGGSNDDASAGFSLRRPSQSERAIDDPIREMEGMHVDEYGSNATFQLPGLLS SHVFEDDDDDDDFPSSPFKEVNVVLGVTESTHALGERETFTATASDRRHCILEDVDVELEMEDVSGHPKDERPSSIGVFFEMEAQQHYSDRLPEPALNDS VHLLPLPDGSPPPPPDSPPPPPPLPSSPPPPPPPPPPPLPPQLSTSLSPPPPPPPPPPPLPSQPPPPLPPVPPSAPLPTVVPQPSVPTQSSLLAKPIRPS QSSVQSSPHLAYQSAVPHEYCTTPNSNQIVQMAGSTPHGNHMFLNPQAPQQNPHFQPVNAPFAQRPLHSNLPQNASGHFSFTTPPIQQLPYPRPYSMPSH PDGRPRFSTDEQWRMPSSEYPDNHPGAWMGGRNPSYAGPSFGQEGHFRPPPPNNMGFQVAPSNKVPAGASIPGHGVTQMLPCRPDMPALNCWRPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.007G071600 [exp]	0	1
AT1G72390			unknown protein		Potri.003G069200 [exp]	2.00	0.9025
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	2.82	0.9045
AT5G51300			splicing factor-related (.1.2....		Potri.003G107200 [exp]	3.00	0.8838
AT4G04790			Tetratricopeptide repeat (TPR)...		Potri.011G133100 [exp]	3.16	0.8982
AT4G34310			alpha/beta-Hydrolases superfam...		Potri.014G034100 [exp]	4.24	0.8930
AT1G77800			PHD finger family protein (.1....		Potri.002G089400 [exp]	4.58	0.9037
AT3G63070			Tudor/PWWP/MBT domain-containi...		Potri.014G138700 [exp]	5.65	0.8858
AT5G22750		RAD5A, RAD5	DNA/RNA helicase protein (.1)		Potri.004G189400 [exp]	6.92	0.8762
AT2G03140			alpha/beta-Hydrolases superfam...		Potri.006G136900 [exp]	8.36	0.8701
AT3G08020			PHD finger family protein (.1)		Potri.009G059500 [exp]	9.94	0.8763

Compare expression of checked genes

Potri.007G071600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.