Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08240 92 / 1e-21 unknown protein AT5G23160 78 / 1e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G092400 [exp] 362 / 5e-126 AT5G08240 100 / 9e-25 unknown protein Potri.001G408900 [exp] 70 / 1e-13 AT5G08240 52 / 1e-07 unknown protein Potri.019G119000 [exp] 62 / 8e-11 AT5G08240 52 / 1e-07 unknown protein Potri.013G149300 [exp] 61 / 1e-10 AT5G23160 56 / 5e-09 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017395 [exp] 92 / 1e-21 AT5G23160 83 / 6e-19 unknown protein Lus10010194 [exp] 92 / 5e-21 AT5G23160 90 / 3e-20 unknown protein Lus10040984 [exp] 89 / 4e-20 AT5G08240 89 / 2e-20 unknown protein Lus10013437 [exp] 87 / 1e-19 AT5G23160 82 / 5e-18 unknown protein Lus10037868 [exp] 47 / 5e-06 ND 45 / 1e-05 Lus10038562 [exp] 46 / 2e-05 ND 45 / 2e-05 Lus10033739 [exp] 44 / 9e-05 ND 41 / 5e-04
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G071900.1 pacid=42765490 polypeptide=Potri.007G071900.1.p locus=Potri.007G071900 ID=Potri.007G071900.1.v4.1 annot-version=v4.1 ATGGAGCCCGCCCCCTGTCAACCCAAACCCAAAAAAACAAGAACAAAATTCACAAGTTTTCTCGGTTGTTTTGGATTTTCCAGGAAAGCCATTCCATCTC CCACGAAAAAACCGACCAAGAAGAAACAAACAGGTTTGTTTTCTTGGTCTTGGGTTTGCGTCAAGAACTCAGGCGCCAAAACTGTCCCCATAGACTCTAC CGTGCCTGGCAGTGACCGAACCTCTGGTGCCTCGAAGCCAAAGCGTCAAAAACCCTTAACCAAACACGAGACGCCACGTCAAACTCCGGCGAGAGTCAGT TCAGATCGAGCACCCAAAGAGATGCCTGGAGAGACATGGTACAGGTCTTCTGAGCAAGACATCATCCTCGAAAATGGGAAACTCTCGGATCACGTGGAAA CTACAAAGGACGCCACGTGTAAGAAACGATTGTCCTTTTGCCGGAAAGTAGACGCTATAAGAACCGGCACTAACCAACCCGGCTCGCCCGAAGTCAAGGA AAAGCCCATTCGAACTGTGTCCATAATAACCCGATCAGAATCCTCCCCCTCACAGCCAGTTGAAAGACCGGCAACAAAAACACCAAACACGGCGGCTCGG TCCCGGTTCACGATTAAGAGGCCTCGTAAAGAAAACGATCATCAAAATGGGAAGAAAAGTGACCACCCCTTCGTTGGTATGTCAATCATTATAATGACCT TGGTTTTAATGCTGGCATGGGGTAAATTATGTGCCATTCTCTGTACTTCTGCTTGGTTCTACTTCGTCCCTCGATTAAGGAGTGAAGACAGTGTGAGCAA TGGTTTGATTTCGGCGGAATCATTTTATGATTCGGAGGAATATAAGAAGAAAGTAGTTATGGATGGATTCCTCGAACGAAGCCGCCGCTCTATATCATGA
AA sequence Show only first row Show all	>Potri.007G071900.1 pacid=42765490 polypeptide=Potri.007G071900.1.p locus=Potri.007G071900 ID=Potri.007G071900.1.v4.1 annot-version=v4.1 MEPAPCQPKPKKTRTKFTSFLGCFGFSRKAIPSPTKKPTKKKQTGLFSWSWVCVKNSGAKTVPIDSTVPGSDRTSGASKPKRQKPLTKHETPRQTPARVS SDRAPKEMPGETWYRSSEQDIILENGKLSDHVETTKDATCKKRLSFCRKVDAIRTGTNQPGSPEVKEKPIRTVSIITRSESSPSQPVERPATKTPNTAAR SRFTIKRPRKENDHQNGKKSDHPFVGMSIIIMTLVLMLAWGKLCAILCTSAWFYFVPRLRSEDSVSNGLISAESFYDSEEYKKKVVMDGFLERSRRSIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08240			unknown protein		Potri.007G071900 [exp]	0	1
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Potri.011G070100 [exp]	1.41	0.9222	WRKY65.2
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.016G121800 [exp]	1.73	0.9124
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Potri.014G014100 [exp]	4.00	0.8567
AT5G28050			Cytidine/deoxycytidylate deami...		Potri.013G036000 [exp]	5.47	0.8345
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Potri.001G184100 [exp]	6.00	0.8695	GL2.2
AT5G57630		CIPK21, SnRK3.4	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G171400 [exp]	6.70	0.8868
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Potri.003G052400 [exp]	7.21	0.8384	GL2.1
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.014G125300 [exp]	9.38	0.8432
AT1G13340			Regulator of Vps4 activity in ...		Potri.004G100900 [exp]	9.94	0.8540
AT2G48030			DNAse I-like superfamily prote...		Potri.014G136900 [exp]	12.32	0.8300

Compare expression of checked genes

Potri.007G071900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.