Plant FIBer expression Database

Potri.007G072000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G17330 341 / 2e-120 Metal-dependent phosphohydrolase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040985
[exp]
341 / 4e-120 AT1G17330 346 / 5e-122 Metal-dependent phosphohydrolase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0237 HD_PDEase PF01966 HD HD domain
Representative CDS sequence
>Potri.007G072000.1 pacid=42765406 polypeptide=Potri.007G072000.1.p locus=Potri.007G072000 ID=Potri.007G072000.1.v4.1 annot-version=v4.1
ATGGCAAGTATAGTGACAACAGTGAGGAATGCAGAGAAATTAGTGGAAAGAACCATGAAAGGAAACGACGCGTCACACGATGCAGCTCATGTGTGGAGAG
TGAGAGACCTTGCTCTCTCTCTTGCTCAAGAAGAAGGCCTCTCTTCTGATTCAATGGAAATAGTAGAGCTTGCTGCACTTCTTCATGATATAGGTGACTA
CAAATACTTAAGGGATCCATCTGAGGAGAAAATTGTTGAGAATTTTCTGGAGGAAGAGGGAGTAGATGAAGTAAAAAAGATGAAGATCCTGGCAATCATT
AAGGGGATGGGTTTTAAGGAGGAACTTGCAGGGCATGCAAATGGCGAATTTTCTCCAGAATTCAGGGTTGTGCAGGATGCTGATCGGCTTGATGCAATCG
GTGCAGTTGGAATTGCCCGATGCTTTACTTTTGGTGGAAGTAGGAACAGGGTGCTTCATGACCCTGCTATTCACCCACGCTCAGATTTGTCAAAGGAACA
GTATATGAAGAAAGAAGAGCAGACAACTGTGAACCACTTCCATGAAAAACTTCTCAAGCTGAAGGATTTGATGAAAACAAAGGCTGGGCAGAGGAGGGCT
GAGAGAAGACACAAGTTCATGGAGGAATTTTTGAAAGAGTTCTATGAAGAATGGGATGGACGAGCTTGA
AA sequence
>Potri.007G072000.1 pacid=42765406 polypeptide=Potri.007G072000.1.p locus=Potri.007G072000 ID=Potri.007G072000.1.v4.1 annot-version=v4.1
MASIVTTVRNAEKLVERTMKGNDASHDAAHVWRVRDLALSLAQEEGLSSDSMEIVELAALLHDIGDYKYLRDPSEEKIVENFLEEEGVDEVKKMKILAII
KGMGFKEELAGHANGEFSPEFRVVQDADRLDAIGAVGIARCFTFGGSRNRVLHDPAIHPRSDLSKEQYMKKEEQTTVNHFHEKLLKLKDLMKTKAGQRRA
ERRHKFMEEFLKEFYEEWDGRA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G17330 Metal-dependent phosphohydrola... Potri.007G072000
[exp]
0 1
AT1G23360 MENG S-adenosyl-L-methionine-depend... Potri.008G188600
[exp]
3.46 0.7381
AT5G51100 FSD2 Fe superoxide dismutase 2 (.1) Potri.012G112301
[exp]
6.32 0.7012
AT1G49970 SVR2, NCLPP5, C... SUPPRESSOR OF VARIEGATION 2, N... Potri.001G295266
[exp]
8.60 0.7606
AT2G21340 MATE efflux family protein (.1... Potri.009G122900
[exp]
18.52 0.6313
AT3G04460 PEX12, ATPEX12,... ABERRANT PEROXISOME MORPHOLOGY... Potri.013G047800
[exp]
19.07 0.7111
AT3G19640 MRS2-3, MGT4 magnesium transporter 4 (.1) Potri.001G291932
[exp]
21.63 0.7561
AT2G03620 AtMRS2-5, AtMGT... magnesium transporter 3 (.1.2) Potri.008G096200
[exp]
24.89 0.6467
AT4G19540 INDH, INDL IND1(iron-sulfur protein requi... Potri.002G042600
[exp]
26.83 0.6568
AT4G02070 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS... Potri.008G191051
[exp]
27.71 0.6828
AT2G02410 unknown protein Potri.003G046600
[exp]
39.20 0.6503

Potri.007G072000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.