Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23190 800 / 0 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 744 / 0 Cytochrome P450 superfamily protein (.1) AT1G24540 480 / 2e-165 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) AT1G01600 466 / 2e-159 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1) AT4G00360 456 / 1e-155 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) AT1G63710 448 / 7e-153 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT3G26125 447 / 4e-152 CYP86C2 "cytochrome P450, family 86, subfamily C, polypeptide 2", cytochrome P450, family 86, subfamily C, polypeptide 2 (.1) AT1G13140 445 / 2e-151 CYP86C3 "cytochrome P450, family 86, subfamily C, polypeptide 3", cytochrome P450, family 86, subfamily C, polypeptide 3 (.1.2) AT2G45970 443 / 9e-151 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT1G13150 429 / 4e-145 CYP86C4 "cytochrome P450, family 86, subfamily C, polypeptide 4", cytochrome P450, family 86, subfamily C, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G092200 [exp] 983 / 0 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.008G183300 [exp] 495 / 4e-171 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.010G050100 [exp] 493 / 3e-170 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.014G085800 [exp] 453 / 2e-154 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Potri.003G129100 [exp] 447 / 4e-152 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Potri.009G043700 [exp] 424 / 1e-143 AT5G58860 827 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.001G249700 [exp] 414 / 2e-139 AT5G58860 790 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.015G132800 [exp] 397 / 3e-133 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.016G031700 [exp] 387 / 3e-129 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040986 [exp] 735 / 0 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 735 / 0 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 714 / 0 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10032278 [exp] 423 / 4e-142 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10006232 [exp] 413 / 6e-139 AT1G24540 524 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Lus10014768 [exp] 426 / 5e-137 AT4G00360 756 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) Lus10040687 [exp] 405 / 3e-136 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10018217 [exp] 405 / 7e-136 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10003669 [exp] 379 / 1e-125 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10002527 [exp] 361 / 4e-119 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.007G072100.1 pacid=42766716 polypeptide=Potri.007G072100.1.p locus=Potri.007G072100 ID=Potri.007G072100.1.v4.1 annot-version=v4.1 ATGATCCACACCATGATCAGTCCTAGCATCAACAATAATCTCACTTCCCTTTCCTCCTCCTTGTCCGATGATGTTGCCGGATACTTCATTTCGAGACTAT TTTTCTTGCGAGATATTCAGATTTTAGAGCTCCTCCTTGCTCTTGTGGTCTTCATTGCTATACATTCTCTTAGGCAGAAAAAGCATTGTGGACTGCCCGT ATGGCCAGTTCTAGGCATGCTACCATCTTTGGTGTCTGGTCTTCAATGCAACATGTACGAATGGATTTCTGATGTACTTTGCGATCGAAATGGGACTTTT CGATTCAAAGGTCCATGGTTTAGTAGTCTTAATTGTGTAGTGACTGCGGATCCAAGAAATCTTGAGCATCTTCTCAAGACCAAGTTCCCTAATTACCCCA AAGGCCAGTATTTTCGCGACACGCTAGGTGATCTTCTCGGCGGAGGGATATTCAATGCTGATGATGAGAAATGGCAAAGGCAAAGAAAGACAGCAAGCAT TGAGTTTCATTCAGCAAAGTTCAGGCAATTGACTACTGATTCATTGCTTGAACTTGTTCATTCTAGGCTCTTGCCAGTCCTAGAAAATGCGGAGAACAAC TCAATGTCGATTGATATGCAGGATATTCTTTTGAGGCTAACATTTGATAATGTTTGCATGATAGCATTTGGGGTTGATCCAGGATGCTTACGCCCTGGTT TGCCTGATATACCATTTGCTAGAGCCTTCGAAGATGCAACAGAAGCTACTCTCCTACGTTTCGTTACACCAACATGCATATGGAAAGTTATGAGGTTTCT TGATTTGGGGTCCGAAAAGAAGCTGAAAAGATCAATAAAAGATGTGGATGAGTTTGCAGAAGATGTCATAAGGACAAGAAAGAAAGAACTCTCCCTGCAA AGTGAGAATGATAAGGAGAAGCAAAGATCAGATCTTTTAACAGTGTTTATGGGGTTAAAAGATGAGAATGGGAAGCCATTTTCAGACAGATTTTTAAGAG ATATTTGTGTAAACTTTATTCTTGCTGGCAGAGACACTTCTTCAGTGGCAATGAGCTGGTTCTTTTGGCTTCTTGATTCACATCCAACAGTAGAGGAGAA GATTCTTGCTGAAATATGCAAGATAATTAGTGAGCGAGAAGATTTGGACACCAAAACTCCATTAGTGTTTAGGCCAGAGGAGATAAAGAAGATGGACTAT TTGCAAGCTGCTCTATCTGAGGCCTTGAGGTTATACCCTTCAGTACCAGTGGACCACAAAGAGGTTGTTGAGGATGACATTTTTCCTGATGGGACTGAAT TAAAGAAGGGGACAAAAGTGATTTATGCAATATATGCAATGGGAAGAATGGAGGCAGTATGGGGAAGTGACTGCAGGGAGTTTAAGCCAGAGAGATGGTT AAGAATCATCGACGGACGGTTCATGAGTGAATCAGCCTACAAATTCACTGCTTTCAACGGCGGTCCTCGACTATGCTTAGGGAAAGATTTTGCTTACTAT CAGATGAGATTTGCTGTGGCGTCAATCTTGTATCGTTACCATGTGAAGGTAGTGAAAGATCATCCTGTGGTGCCTAAGCTTGCTCTGACAATGTACATGA AGCATGGGTTGAAGGTGAATCTAGTCAAGCGTGAGGAGTCTGAGCTTCAAAAATACCTTAATATCAAGTAG
AA sequence Show only first row Show all	>Potri.007G072100.1 pacid=42766716 polypeptide=Potri.007G072100.1.p locus=Potri.007G072100 ID=Potri.007G072100.1.v4.1 annot-version=v4.1 MIHTMISPSINNNLTSLSSSLSDDVAGYFISRLFFLRDIQILELLLALVVFIAIHSLRQKKHCGLPVWPVLGMLPSLVSGLQCNMYEWISDVLCDRNGTF RFKGPWFSSLNCVVTADPRNLEHLLKTKFPNYPKGQYFRDTLGDLLGGGIFNADDEKWQRQRKTASIEFHSAKFRQLTTDSLLELVHSRLLPVLENAENN SMSIDMQDILLRLTFDNVCMIAFGVDPGCLRPGLPDIPFARAFEDATEATLLRFVTPTCIWKVMRFLDLGSEKKLKRSIKDVDEFAEDVIRTRKKELSLQ SENDKEKQRSDLLTVFMGLKDENGKPFSDRFLRDICVNFILAGRDTSSVAMSWFFWLLDSHPTVEEKILAEICKIISEREDLDTKTPLVFRPEEIKKMDY LQAALSEALRLYPSVPVDHKEVVEDDIFPDGTELKKGTKVIYAIYAMGRMEAVWGSDCREFKPERWLRIIDGRFMSESAYKFTAFNGGPRLCLGKDFAYY QMRFAVASILYRYHVKVVKDHPVVPKLALTMYMKHGLKVNLVKREESELQKYLNIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Potri.007G072100 [exp]	0	1
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Potri.005G092200 [exp]	1.00	0.9895
AT5G44550			Uncharacterised protein family...		Potri.001G442300 [exp]	1.41	0.9879
AT5G49350			Glycine-rich protein family (....		Potri.008G108400 [exp]	1.73	0.9814
AT3G05390			unknown protein		Potri.017G135100 [exp]	2.64	0.9729
AT4G34419			unknown protein		Potri.009G102800 [exp]	2.82	0.9776
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Potri.015G090000 [exp]	4.89	0.9701
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.011G145000 [exp]	5.47	0.9669	Pt-HMGR3.2
AT4G20390			Uncharacterised protein family...		Potri.011G154900 [exp]	6.48	0.9751
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.002G174500 [exp]	8.06	0.9763
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Potri.007G036300 [exp]	8.48	0.9659

Compare expression of checked genes

Potri.007G072100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.