Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08260 632 / 0 SCPL35 serine carboxypeptidase-like 35 (.1) AT5G23210 522 / 0 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT4G30610 459 / 2e-159 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT1G61130 449 / 2e-155 SCPL32 serine carboxypeptidase-like 32 (.1) AT3G17180 449 / 6e-155 SCPL33 serine carboxypeptidase-like 33 (.1) AT3G02110 447 / 2e-154 SCPL25 serine carboxypeptidase-like 25 (.1) AT1G11080 445 / 3e-153 SCPL31 serine carboxypeptidase-like 31 (.1.2) AT3G63470 442 / 6e-152 SCPL40 serine carboxypeptidase-like 40 (.1) AT4G15100 439 / 5e-151 SCPL30 serine carboxypeptidase-like 30 (.1) AT3G07990 432 / 6e-149 SCPL27 serine carboxypeptidase-like 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091700 [exp] 531 / 0 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.005G091800 [exp] 525 / 0 AT5G23210 585 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.001G261100 [exp] 449 / 1e-154 AT3G63470 611 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.009G055900 [exp] 447 / 3e-154 AT3G63470 570 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.011G046600 [exp] 444 / 3e-153 AT1G11080 674 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.006G183200 [exp] 444 / 3e-153 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G037800 [exp] 442 / 3e-152 AT1G11080 653 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.004G120100 [exp] 440 / 1e-151 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.018G105700 [exp] 439 / 1e-151 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010190 [exp] 504 / 2e-176 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017391 [exp] 498 / 5e-174 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10011213 [exp] 449 / 5e-155 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10010191 [exp] 447 / 3e-154 AT5G23210 476 / 2e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10019954 [exp] 446 / 1e-153 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10018467 [exp] 444 / 4e-153 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10015489 [exp] 444 / 6e-153 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10017392 [exp] 442 / 5e-152 AT5G23210 475 / 8e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10037810 [exp] 433 / 1e-148 AT3G17180 565 / 0.0 serine carboxypeptidase-like 33 (.1) Lus10015382 [exp] 431 / 2e-147 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.007G072300.1 pacid=42765639 polypeptide=Potri.007G072300.1.p locus=Potri.007G072300 ID=Potri.007G072300.1.v4.1 annot-version=v4.1 ATGGCAAATTTAAGCAAATGGTTGTTTTGTTTCCTAGTTTCTACTACGGTGATAGTAGCAGCAGTTGGGAGAGAGATTTCTGACGGAGAAGAAGCAAGGA GAGAAGCTGATAGAGTGACCAATTTGCCTGGGCAACCACAAGTAAGGTTTCAGCATTATGCTGGTTATGTAAAACTTGGACCCCAGAATCAGAGGGCATT GTTCTATTGGTTCTTTGAAGCAAAAGAGGACGCTTCTCAAAAGCCTCTTGTTCTGTGGCTTAATGGAGGACCTGGGTGCTCCTCCATAGCTTATGGCGCA GCGCAAGAACTTGGCCCCTTTTTAGTTAGGGGAAATGGAACACAGCTTATTCTCAACGAATACTCTTGGAACAAAGCTGCAAATATGCTTTTCCTGGAGG CTCCTGTGGGCGTGGGATTTTCATACACAAATAATTCCGAAGATCTATATAAACTAGGTGATAAAGTTACAGCTGATGACTCTCATACCTTCTTAATCAA TTGGTTCAAAAGGTTTCCAAATTTCAAATCACATGATTTTTATATAGCTGGAGAGAGCTACGCAGGGCACTATGTTCCCCAACTAGCTGAGCTCATTTAC GAAAGAAACAAAGGAGCTACAAAAAGTTCTTACATAAATCTCAAGGGTTTCATGATCGGAAATGCTGTGATTAATGATGAAACGGACTCTGCGGGCATTG TGGATTACGCGTGGAGTCATGCAATTATCTCAGACCAGCTCTACCACAACATAAAGGAATGTGATCATCAAGGAAGCGTAACAAACGAGTGTGTTGTTCA TTACAGAGGGTTCGCAGAAGCTTATTCAGACATCGACATTTATAGCATCTACACTCCAGTTTGTCTCTCCGAATATTCTACTCGAATTTCATCGAGACTT GTCGTCGCACCTCGCCTTCTTTCAAAATTACATGACCTGGTGCATAGGCTACCATCAGGATATGATCCATGTACGGAAGATTATGCAGAGAAGTTTTTCA ACAGAGAGGATGTTCAGAAAGCCCTACATGCCAATGTTACCAAATTATCCTATCCTTATACACCATGCAGCAATGCAATAAGGAAGTGGAATGACTCTGC GGAAACAATACTGCCTATCATTCAGAAGCTTTTAAACGCTGGATTGCGTATTTGGATCTATAGTGGAGACACTGATGGGAGAGTACCAGTAACATCAACA AGGTACAGCATAAAGAAAATGGGGTTAAAGGTGAATGAAGAATGGAGGGCATGGTTTCATAAGAGTCAAGTGGCAGGATGGGTTGAGACGTATGAGAGAG GGCTCGTATTAGCAACCATACGTGGTGCAGGCCACCAGGTTCCGGTCTTTGCACCTCAGCAGTCCCTTTCTCTCTTCTCTCATTTCCTTTCAGCCAAAAC TTTGCCGGCTTCTTCAAGGTTCTAG
AA sequence Show only first row Show all	>Potri.007G072300.1 pacid=42765639 polypeptide=Potri.007G072300.1.p locus=Potri.007G072300 ID=Potri.007G072300.1.v4.1 annot-version=v4.1 MANLSKWLFCFLVSTTVIVAAVGREISDGEEARREADRVTNLPGQPQVRFQHYAGYVKLGPQNQRALFYWFFEAKEDASQKPLVLWLNGGPGCSSIAYGA AQELGPFLVRGNGTQLILNEYSWNKAANMLFLEAPVGVGFSYTNNSEDLYKLGDKVTADDSHTFLINWFKRFPNFKSHDFYIAGESYAGHYVPQLAELIY ERNKGATKSSYINLKGFMIGNAVINDETDSAGIVDYAWSHAIISDQLYHNIKECDHQGSVTNECVVHYRGFAEAYSDIDIYSIYTPVCLSEYSTRISSRL VVAPRLLSKLHDLVHRLPSGYDPCTEDYAEKFFNREDVQKALHANVTKLSYPYTPCSNAIRKWNDSAETILPIIQKLLNAGLRIWIYSGDTDGRVPVTST RYSIKKMGLKVNEEWRAWFHKSQVAGWVETYERGLVLATIRGAGHQVPVFAPQQSLSLFSHFLSAKTLPASSRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08260		SCPL35	serine carboxypeptidase-like 3...		Potri.007G072300 [exp]	0	1
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Potri.008G088300 [exp]	10.14	0.7397	PtEXPA4,EXPA1.2
AT5G04310			Pectin lyase-like superfamily ...		Potri.010G229000 [exp]	11.48	0.7396
AT4G31360			selenium binding (.1)		Potri.018G004901 [exp]	31.38	0.7243
AT2G37560		ATORC2	origin recognition complex sec...		Potri.003G094800 [exp]	31.93	0.6807	Pt-ORC2.1
AT2G07170			ARM repeat superfamily protein...		Potri.006G079500 [exp]	39.93	0.7076
AT5G59970			Histone superfamily protein (....		Potri.008G047500 [exp]	45.16	0.6935
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Potri.012G040200 [exp]	45.74	0.6878
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Potri.001G329700 [exp]	47.94	0.6918
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Potri.003G186900 [exp]	54.00	0.6798
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Potri.002G214000 [exp]	56.08	0.6859

Compare expression of checked genes

Potri.007G072300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.